title: Aozan: an automated post-sequencing data-processing pipeline.
abstract: BACKGROUND
  Data management and quality control of output from Illumina sequencers is a disk space- and time-consuming task. Thus, we developed Aozan to automatically handle data transfer, demultiplexing, conversion and quality control once a run has finished. This software greatly improves run data management and the monitoring of run statistics via automatic emails and HTML web reports.
  
  
  METHODS
  Aozan is implemented in Java and Python, supported on Linux systems, and distributed under the GPLv3 License at: http://www.outils.genomique.biologie.ens.fr/aozan/ . Aozan source code is available on GitHub: https://github.com/GenomicParisCentre/aozan .
  
  
  BACKGROUND
  aozan@biologie.ens.fr.
authors.affiliation: École Normale Supérieure, PSL Research University, CNRS, Inserm, Institut de Biologie de l'École Normale Supérieure (IBENS), Plateforme Génomique, Paris, France.
authors.forename: Sandrine
authors.initials: S
authors.lastname: Perrin
authors.affiliation: École Normale Supérieure, PSL Research University, CNRS, Inserm, Institut de Biologie de l'École Normale Supérieure (IBENS), Plateforme Génomique, Paris, France.
authors.forename: Cyril
authors.initials: C
authors.lastname: Firmo
authors.affiliation: École Normale Supérieure, PSL Research University, CNRS, Inserm, Institut de Biologie de l'École Normale Supérieure (IBENS), Plateforme Génomique, Paris, France.
authors.forename: Sophie
authors.initials: S
authors.lastname: Lemoine
authors.affiliation: École Normale Supérieure, PSL Research University, CNRS, Inserm, Institut de Biologie de l'École Normale Supérieure (IBENS), Plateforme Génomique, Paris, France.|Sorbonne Universités, UPMC Univ Paris 06, Univ Antilles, Univ Nice Sophia Antipolis, CNRS, Evolution Paris Seine - Institut de Biologie Paris Seine (EPS - IBPS), Paris, France.
authors.forename: Stéphane
authors.initials: S
authors.lastname: Le Crom
authors.affiliation: École Normale Supérieure, PSL Research University, CNRS, Inserm, Institut de Biologie de l'École Normale Supérieure (IBENS), Plateforme Génomique, Paris, France.
authors.forename: Laurent
authors.initials: L
authors.lastname: Jourdren
mesh_terms: D006801:Humans; D011786:Quality Control; D017422:Sequence Analysis, DNA; D012984:Software