title: Functional roles of T3.37 and S5.46 in the activation mechanism of the dopamine D1 receptor.
abstract: The activation mechanism of dopamine receptors is unknown. The amino acids S5.42, S5.43, and S5.46 located in helix 5 appear to be crucial, but their specific roles in receptor activation have not been studied. We modeled the D1 dopamine receptor using the crystal structures of the D3 dopamine and β2 adrenergic receptors. Molecular dynamics simulations show that the interaction of dopamine with the D1 receptor leads to the formation of a hydrogen-bond network with its catechol group and helices 3, 5, and 6, including water molecules. The para hydroxyl group of dopamine binds directly to S5.42 and N6.55, the latter also interacting with S5.43. Unexpectedly, S5.46 does not interact directly with the catechol; instead, it interacts through a water molecule with S5.42 and directly with T3.37. The formation of this hydrogen-bond network, part of which was previously observed in docking studies with dopamine agonists, triggers the opening of the E6.30-R3.60 ionic lock associated with the activation of GPCRs. These changes do not occur in the unbonded (apo) receptor or when it is in a complex with the antagonist 3-methoxy-5,6,7,8,9,14-hexahydrodibenz[d,g]azecine. Our results provide valuable insight into the T3.37-S5.46-water-S5.43-ligand interaction, which may be crucial to the activation of the D1 dopamine receptor and should be considered during the design of novel agonists. Graphical Abstract General representation of the relationship between the formation of the HBN and the opening of the R3.50-E6.30 ionic lock.
authors.affiliation: Department of Chemistry, Faculty of Sciences, University of Chile, Ñuñoa, 7750000, Santiago, Chile. e.hugocaselli@ug.uchile.cl.
authors.forename: Estefanía A
authors.initials: EA
authors.lastname: Hugo
authors.affiliation: Department of Chemistry, Faculty of Sciences, University of Chile, Ñuñoa, 7750000, Santiago, Chile.
authors.forename: Bruce K
authors.initials: BK
authors.lastname: Cassels
authors.affiliation: Departamento de Química Orgánica, Facultad de Química, Pontificia Universidad Católica de Chile, Macul, 7810003, Santiago, Chile. afierro@uc.cl.
authors.forename: Angélica
authors.initials: A
authors.lastname: Fierro
mesh_terms: D001665:Binding Sites; D019295:Computational Biology; D004298:Dopamine / Q000378:metabolism*; D006801:Humans; D006860:Hydrogen Bonding; D008024:Ligands; D056004:Molecular Dynamics Simulation; D011487:Protein Conformation; D017447:Receptors, Dopamine D1 / Q000378:metabolism*
chemical_list: C583260:DRD1 protein, human; D008024:Ligands; D017447:Receptors, Dopamine D1; D004298:Dopamine
keywords: Activation; Dopamine; Dopamine D1 receptor; Molecular dynamics; S5.46