title: Datasets for transcriptomics, q-proteomics and phenotype microarrays of polyphosphate metabolism mutants fromEscherichia coli.
abstract: Here, we provide the dataset associated with our research article on the polyphosphate metabolism entitled, "Multi-level evaluation of Escherichia coli polyphosphate related mutants using global transcriptomic, proteomic and phenomic analyses". By integrating different omics levels (transcriptome, proteome and phenome), we were able to studyEscherichia colipolyphosphate mutant strains (Δppk1,Δppx, andΔppk1-ppx). We have compiled here all datasets from DNA microarrys, q-proteomic (Isotope-Coded Protein Labeling, ICPL) and phenomic (Phenotype microarray) raw data we have obtained in all polyP metabolism mutants.
authors.affiliation: Systems Microbiology Laboratory, Department of Biology, Faculty of Science, University of Chile, Chile.
authors.forename: Macarena
authors.initials: M
authors.lastname: Varas
authors.affiliation: Systems Microbiology Laboratory, Department of Biology, Faculty of Science, University of Chile, Chile; Department of Ecology, Faculty of Science, University of Chile, Chile.
authors.forename: Camilo
authors.initials: C
authors.lastname: Valdivieso
authors.affiliation: Systems Microbiology Laboratory, Department of Biology, Faculty of Science, University of Chile, Chile.
authors.forename: Cecilia
authors.initials: C
authors.lastname: Mauriaca
authors.affiliation: Systems Microbiology Laboratory, Department of Biology, Faculty of Science, University of Chile, Chile.
authors.forename: Javiera
authors.initials: J
authors.lastname: Ortíz-Severín
authors.affiliation: Proteomic Service, CNB CSIC, Spain.
authors.forename: Alberto
authors.initials: A
authors.lastname: Paradela
authors.affiliation: Facultad de Ciencias Biológicas, Center for Bioinformatics and Integrative Biology, Biosystems Engineering Laboratory, Universidad Andrés Bello, Chile.
authors.forename: Ignacio
authors.initials: I
authors.lastname: Poblete-Castro
authors.affiliation: Department of Biology, Faculty of Sciences, University of Chile, Chile.
authors.forename: Ricardo
authors.initials: R
authors.lastname: Cabrera
authors.affiliation: Systems Microbiology Laboratory, Department of Biology, Faculty of Science, University of Chile, Chile.
authors.forename: Francisco P
authors.initials: FP
authors.lastname: Chávez
keywords: Phenomics; Polyphosphate; Q-proteomics; Systems biology; Transcriptomics