title: Plant diversity and plant identity influence Fusarium communities in soil.
abstract: Fusarium communities play important functional roles in soil and in plants as pathogens, endophytes, and saprotrophs. This study tests how rhizosphere Fusarium communities may vary with plant species, changes in the diversity of the surrounding plant community, and soil physiochemical characteristics. Fusarium communities in soil associated with the roots of two perennial prairie plant species maintained as monocultures or growing within polyculture plant communities were characterized using targeted metagenomics. Amplicon libraries targeting the RPB2 locus were generated from rhizosphere soil DNAs and sequenced using pyrosequencing. Sequences were clustered into operational taxonomic units (OTUs) and assigned a taxonomy using the Evolutionary Placement Algorithm. Fusarium community composition was differentiated between monoculture and polyculture plant communities, and by plant species in monoculture, but not in polyculture. Taxonomic classification of the Fusarium OTUs showed a predominance of F. tricinctum and F. oxysporum as well of the presence of a clade previously only found in the Southern Hemisphere. Total Fusarium richness was not affected by changes in plant community richness or correlated with soil physiochemical characteristics. However, OTU richness within two predominant phylogenetic lineages within the genus was positively or negatively correlated with soil physiochemical characteristics among samples within each lineage. This work shows that plant species, plant community richness, and soil physiochemical characteristics may all influence the composition and richness of Fusarium communities in soil.
authors.affiliation: a Department of Plant Pathology , University of Minnesota , St. Paul , Minnesota 55108.
authors.forename: Nicholas
authors.initials: N
authors.lastname: LeBlanc
authors.affiliation: a Department of Plant Pathology , University of Minnesota , St. Paul , Minnesota 55108.
authors.forename: Linda
authors.initials: L
authors.lastname: Kinkel
authors.affiliation: a Department of Plant Pathology , University of Minnesota , St. Paul , Minnesota 55108.|b United States Department of Agriculture, Agricultural Research Service Cereal Disease Laboratory , University of Minnesota , St. Paul , Minnesota 55108.
authors.forename: H Corby
authors.initials: HC
authors.lastname: Kistler
mesh_terms: D044822:Biodiversity; D055598:Chemical Phenomena; D016000:Cluster Analysis; D005670:Fusarium / Q000145:classification* / Q000302:isolation & purification*; D014644:Genetic Variation; D005838:Genotype; D056186:Metagenomics; D010944:Plants / Q000145:classification* / Q000382:microbiology*; D012319:RNA Polymerase II / Q000235:genetics; D017422:Sequence Analysis, DNA; D012987:Soil / Q000737:chemistry; D012988:Soil Microbiology
chemical_list: D012987:Soil; D012319:RNA Polymerase II
keywords: RPB2; diversity; ecology; fungi; prairie