title: The Tomato Expression Atlas.
abstract: CONCLUSIONS
  With the development of new high-throughput DNA sequencing technologies and decreasing costs, large gene expression datasets are being generated at an accelerating rate, but can be complex to visualize. New, more interactive and intuitive tools are needed to visualize the spatiotemporal context of expression data and help elucidate gene function. Using tomato fruit as a model, we have developed the Tomato Expression Atlas to facilitate effective data analysis, allowing the simultaneous visualization of groups of genes at a cell/tissue level of resolution within an organ, enhancing hypothesis development and testing in addition to candidate gene identification. This atlas can be adapted to different types of expression data from diverse multicellular species.
  
  
  METHODS
  The Tomato Expression Atlas is available at http://tea.solgenomics.net/ . Source code is available at https://github.com/solgenomics/Tea .
  
  
  BACKGROUND
  jr286@cornell.edu or lam87@cornell.edu.
  
  
  BACKGROUND
  Supplementary data are available at Bioinformatics online.
authors.affiliation: Boyce Thompson Institute, Ithaca, NY 14853, USA.
authors.forename: Noe
authors.initials: N
authors.lastname: Fernandez-Pozo
authors.affiliation: Boyce Thompson Institute, Ithaca, NY 14853, USA.
authors.forename: Yi
authors.initials: Y
authors.lastname: Zheng
authors.affiliation: Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA.
authors.forename: Stephen I
authors.initials: SI
authors.lastname: Snyder
authors.affiliation: Boyce Thompson Institute, Ithaca, NY 14853, USA.
authors.forename: Philippe
authors.initials: P
authors.lastname: Nicolas
authors.affiliation: Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA.
authors.forename: Yoshihito
authors.initials: Y
authors.lastname: Shinozaki
authors.affiliation: Boyce Thompson Institute, Ithaca, NY 14853, USA.|U.S. Department of Agriculture-Agricultural Research Service, Robert W. Holley Center for Agriculture and Health, Ithaca, NY 14853, USA.
authors.forename: Zhangjun
authors.initials: Z
authors.lastname: Fei
authors.affiliation: Boyce Thompson Institute, Ithaca, NY 14853, USA.|Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA.
authors.forename: Carmen
authors.initials: C
authors.lastname: Catala
authors.affiliation: Boyce Thompson Institute, Ithaca, NY 14853, USA.|U.S. Department of Agriculture-Agricultural Research Service, Robert W. Holley Center for Agriculture and Health, Ithaca, NY 14853, USA.
authors.forename: James J
authors.initials: JJ
authors.lastname: Giovannoni
authors.affiliation: Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA.
authors.forename: Jocelyn K C
authors.initials: JKC
authors.lastname: Rose
authors.affiliation: Boyce Thompson Institute, Ithaca, NY 14853, USA.
authors.forename: Lukas A
authors.initials: LA
authors.lastname: Mueller
mesh_terms: D030561:Databases, Nucleic Acid; D018506:Gene Expression Regulation, Plant; D059014:High-Throughput Nucleotide Sequencing; D018551:Solanum lycopersicum / Q000235:genetics*; D009928:Organ Specificity; D017423:Sequence Analysis, RNA / Q000379:methods*; D059467:Transcriptome