title: Testing for the Occurrence of Selective Episodes During the Divergence of Otophysan Fishes: Insights from Mitogenomics.
abstract: How natural selection shapes biodiversity constitutes a topic of renewed interest during the last few decades. The division Otophysi comprises approximately two-thirds of freshwater fish diversity and probably underwent an extensive adaptive radiation derived from a single invasion of the supercontinent Pangaea, giving place to the evolution of the main five Otophysan lineages during a short period of time. Little is known about the factors involved in the processes that lead to lineage diversification among this group of fishes and identifying directional selection acting over protein-coding genes could offer clues about the processes acting on species diversification. The main objective of this study was to explore the otophysan mitochondrial genome evolution, in order to account for the possible signatures of selective events in this lineage, and to explore for the functional connotations of these molecular substitutions. Mainly, three different approaches were used: the "ω-based" BS-REL and MEME methods, implemented in the DATAMONKEY web server, and analysis of selection on amino acid properties, implemented in the software TreeSAAP. We found evidence of selective episodes along several branches of the evolutionary history of othophysan fishes. Analyses carried out using the BS-REL algorithm suggest episodic diversifying selection at basal branches of the otophysan lineage, which was also supported by analyses implemented in MEME and TreeSAAP. These results suggest that throughout the Siluriformes radiation, an important number of adaptive changes occurred in their mitochondrial genome. The metabolic consequences and ecological correlates of these molecular substitutions should be addressed in future studies.
authors.affiliation: Departamento de Ecología y Evolución, Facultad de Ciencias, Universidad de la República, 11400, Montevideo, Uruguay. passer@fcien.edu.uy.
authors.forename: Alejandro
authors.initials: A
authors.lastname: D'Anatro
authors.affiliation: Departamento de Ecología y Evolución, Facultad de Ciencias, Universidad de la República, 11400, Montevideo, Uruguay.
authors.forename: Facundo
authors.initials: F
authors.lastname: Giorello
authors.affiliation: Departamento de Ecología y Evolución, Facultad de Ciencias, Universidad de la República, 11400, Montevideo, Uruguay.
authors.forename: Matías
authors.initials: M
authors.lastname: Feijoo
authors.affiliation: Departamento de Ecología y Evolución, Facultad de Ciencias, Universidad de la República, 11400, Montevideo, Uruguay.
authors.forename: Enrique P
authors.initials: EP
authors.lastname: Lessa
mesh_terms: D000220:Adaptation, Biological / Q000235:genetics; D000818:Animals; D044822:Biodiversity; D005075:Biological Evolution; D003198:Computer Simulation; D030561:Databases, Nucleic Acid; D019143:Evolution, Molecular; D005399:Fishes / Q000235:genetics*; D049810:Genetic Speciation; D054629:Genome, Mitochondrial / Q000235:genetics*; D010802:Phylogeny; D012641:Selection, Genetic / Q000235:genetics
keywords: Adaptation; Fish; Molecular evolution; Natural selection; Speciation