title: Effect of histone modifications on hMLH1 alternative splicing in gastric cancer.
abstract: hMLH1 is one of the mismatch genes closely related to the occurrence of gastric cancer. Epigenetic regulation may play more important roles than gene mutations in DNA damage repair genes to drive carcinogenesis. In this article, we discuss the role of epigenetic changes, especially histone modifications in the regulation of hMLH1 alternative splicing. Our results showed that hMLH1 delEx10, delEx11, delEx10-11, delEx16 and delEx17 transcripts were ubiquitous in sporadic Chinese gastric cancer patients and gastric cancer cell lines. Lower level of H4K16ac and H3ac was detected in hMLH1 exon 10-11 region in gastric cancer cell lines when compared with human gastric mucosal epithelial cell line GES-1. A significant decrease of hMLH1 delEx11 and delEx10-11 was observed in gastric cancer cell lines after trichostatin A treatment. H3K36me3 and H3K4me2 levels were lower in hMLH1 exon 10-11 and exon 16-17 regions in gastric cancer lines when compared with GES-1. Aberrant transcripts such as hMLH1 delEx11 and delEx10-11 were significantly higher in gastric cancer cell lines after small interfering RNA-mediated knockdown of SETD2 (the specific methyltransferase of H3K36). The hMLH1 delEx10 and delEx10-11 transcripts were increased after interference of SRSF2. Taken together, our study demonstrates that lower level of histone acetylation and specific histone methylation such as H3K36me3 correlate with aberrant transcripts in hMLH1 exon 10-11 region. SRSF2 may be involved in these specific exons skipping as well.
authors.affiliation: 1 Jiangsu Key Laboratory of Molecular Medicine and Department of Medical Genetics, Medical School, Nanjing University, Nanjing, China.
authors.forename: Jin-Xuan
authors.initials: JX
authors.lastname: Zhao
authors.affiliation: 1 Jiangsu Key Laboratory of Molecular Medicine and Department of Medical Genetics, Medical School, Nanjing University, Nanjing, China.
authors.forename: Xiao-Wei
authors.initials: XW
authors.lastname: Li
authors.affiliation: 1 Jiangsu Key Laboratory of Molecular Medicine and Department of Medical Genetics, Medical School, Nanjing University, Nanjing, China.
authors.forename: Bing-Yu
authors.initials: BY
authors.lastname: Shi
authors.affiliation: 1 Jiangsu Key Laboratory of Molecular Medicine and Department of Medical Genetics, Medical School, Nanjing University, Nanjing, China.
authors.forename: Fang
authors.initials: F
authors.lastname: Wang
authors.affiliation: 1 Jiangsu Key Laboratory of Molecular Medicine and Department of Medical Genetics, Medical School, Nanjing University, Nanjing, China.
authors.forename: Zheng-Rong
authors.initials: ZR
authors.lastname: Xu
authors.affiliation: 1 Jiangsu Key Laboratory of Molecular Medicine and Department of Medical Genetics, Medical School, Nanjing University, Nanjing, China.
authors.forename: Hai-Lan
authors.initials: HL
authors.lastname: Meng
authors.affiliation: 1 Jiangsu Key Laboratory of Molecular Medicine and Department of Medical Genetics, Medical School, Nanjing University, Nanjing, China.
authors.forename: Yun-Yan
authors.initials: YY
authors.lastname: Su
authors.affiliation: 2 Department of Pathology, Nanjing Drum Tower Hospital, The Affiliated Hospital of Nanjing University Medical School, Nanjing, China.
authors.forename: Jing-Mei
authors.initials: JM
authors.lastname: Wang
authors.affiliation: 3 Lujiang People's Hospital, Anhui, China.
authors.forename: Nong
authors.initials: N
authors.lastname: Xiao
authors.affiliation: 3 Lujiang People's Hospital, Anhui, China.
authors.forename: Qiong
authors.initials: Q
authors.lastname: He
authors.affiliation: 1 Jiangsu Key Laboratory of Molecular Medicine and Department of Medical Genetics, Medical School, Nanjing University, Nanjing, China.
authors.forename: Ya-Ping
authors.initials: YP
authors.lastname: Wang
authors.affiliation: 1 Jiangsu Key Laboratory of Molecular Medicine and Department of Medical Genetics, Medical School, Nanjing University, Nanjing, China.
authors.forename: Yi-Mei
authors.initials: YM
authors.lastname: Fan
mesh_terms: D000107:Acetylation; D000328:Adult; D000368:Aged; D017398:Alternative Splicing; D045744:Cell Line, Tumor; D019295:Computational Biology; D019175:DNA Methylation; D005260:Female; D006657:Histones / Q000378:metabolism; D006801:Humans; D008297:Male; D008875:Middle Aged; D000070957:MutL Protein Homolog 1 / Q000235:genetics*; D013274:Stomach Neoplasms / Q000235:genetics*
chemical_list: D006657:Histones; C501486:MLH1 protein, human; D000070957:MutL Protein Homolog 1
keywords: Alternative splicing; DNA methylation; gastric cancer; hMLH1; histone modifications