title:    Illumina sequencing of H9 embryoid bodies Methyl-seq library:  HpaII genomic fragments   
design:      H9 embyoid bodies were created by growing H9 hESCs in suspension.  Genomic DNA was extracted and digested with HpaII.  Fragments were made into Illumina sequencing libraries by addition of Illumina linkers to repaired ends, PCR amplification, gel extration of fragments ~30-260bp (excluding linkers), and a second PCR amplification.  Purified DNA was used for cluster generation and sequencing using the Illumina 1G Genome Analyzer.     