title: GSM2550917: WT_24hpf_RIPseq; Danio rerio; RIP-Seq
library_construction_protocol: Microinjection ddx39a-Flag mRNA in ddx39a mutant embryos at one-cell stage. Lysates were clarified from 24hpf embryos were isolated with anti-Flag beads. RNA was harvested using Trizol reagent. Illumina TruSeq RNA Sample Prep Kit was used with 1 ug of total RNA for the construction of sequencing libraries. Magnetic beads with oligo(dT) were used to enrich the mRNAs, and then Frag/Prime buffer was added to fragment the mRNAs. The short mRNA fragments were used as templates and random hexamers were used to synthesize first-strand cDNA. Then double-stranded cDNA was synthesized by adding buffer solution, dNTPs and DNA polymeraseΙ. The double-stranded cDNAs were purified by DNA clean beads according to the manufacturer’s instructions, then repaired at the tail ends, poly(A) added and enriched by PCR amplification. Finally, we tested the inserts sizes in the cDNA libraries on an Agilent 2100 Bioanalyzer.
attributes.tag: GEO Accession
attributes.value: GSM2550917