title: Targeted Exome Seq of cell line: adult GBM: Sample BT145_PDX_Resistant_2_L_2_175483_27_11032_Ligon_MJOP_12_20_18_HC_2_177895_217
design: We have developed a cancer genomic assay to detect somatic mutations, copy number variations and structural variants in tumor DNA extracted from fresh, frozen or formalin-fixed paraffin-embedded samples. The OncoPanel assay surveys exonic DNA sequences of 447 cancer genes and 191 regions across 60 genes for rearrangement detection. DNA is isolated from tissue containing at least 20% tumor nuclei and analyzed by massively parallel sequencing using a solution-phase Agilent SureSelect hybrid capture kit and an Illumina HiSeq 2500 sequencer.
attributes.tag: alignment_software
attributes.value: bwa-0.7.17