title: MORDOR Nasopharygeal sample 36MNP025_RNA_S428_L004: viral reads extract
design: Samples were collected from nasopharyngeal swabs from children enrolled in the MORDOR 1 study in Niger, and sequenced as described. After quality filtering and host removal, any reads identified as "virus" by the Centrifuge Taxonomic Engine (v1.0.3, using the entire NCBI non-redundant nt database downloaded  3/3/2018), were extracted and saved as fastq files with a dummy score of 40.