title: RNAseq of mus musculus microglia
design: Total RNA was collected from sorted CD11c+ and CD11cneg MG and libraries were prepared using the Illumina Nextera kit and sequenced in an Illumina HiSeq machine. Fold change analysis for CD11c+ and CD11cneg MG was performed with GFOLD, whereby genes with more than 1 count per million (cpm) in both Apobec1-/- and wildtype samples were retained in the analysis to control for low expressed genes. Genes with at least 2 fold change between wildtype and Apobec1-/- MG were considered as differentially expressed.