title: RNA-Seq of NT2-D1 cells
design: The reads were screened with FastQ Screen (Babraham Bioinformatics) for possible contamination and a quality control has been performed with FastQC (Babraham Bioinformatics). RSEM (Dewey Lab) was used to quantify the gene expression level and the differential expression between samples, including the corresponding false discovery rate (FDR), was calculated by EdgeR (Bioconductor). STAR (Spliced Transcripts Alignment to a Reference) was used to map the RNA reads to the reference sequence.
identifiers.namespace: SUB5330670
identifiers.id: bfs_133470