title: Axillary nodes from short-day induced StMSI1-OE3 plants rep1
design: The total RNA was isolated from axillary node samples of 35S::StMSI1 over-expression (OE3) plants using RNAiso Plus. RNA concentration and purity was measured using Qubit RNA Assay Kit in Qubit4.0 Flurometer (Life Technologies, CA, USA) and RNA Nano 6000 Assay Kit of the Bioanalyzer 2100 system (Agilent Technologies, CA, USA). Total RNA (3 g per sample) was used as an input material for the sample preparations. Sequencing libraries were generated using NEBNext UltraTM RNA Library Prep Kit for Illumina (NEB, USA) and index codes were added to attribute sequences to each sample. The library quality was assessed on the Agilent Bioanalyzer 2100 system. The clustering of the index-coded samples was performed on a cBot Cluster Generation System using TruSeq PE Cluster Kit v3-cBot-HS (Illumina). After cluster generation, the library preparations were sequenced on an Illumina Hiseq platform and 150 bp paired-end reads were generated.