title: SSFs 1 (barcoded paired-end run)
design: SRA044886 contains the following five experiments: Experiment1 (SSFs 2). 35 bp barcoded fragment run was performed in SRX098242 by AB SOLiD System 3.0. 4 bp barcode sequences are located at the 5 prim end of each fragment sequences (In 35 bp F3 fragment sequences, first 4 bp are barcode. 5th to 35th bp are genomic sequences from each sample). SRX098242 contains the following run with indicated barcode sequences: SRR346400 (1.3 Gb) contains two samples: ChIP-exo Reb1 (biological replicate 2, TCCC) and ChIP-exo Reb1 (biological replicate 3, TAGC). Experiment2 (SSFs 1). Barcoded paired-end run was performed in SRX098212 by AB SOLiD System 3.0. 35 bp F3 (mate 1) run contains genomic sequences. 10 bp R2 (mate 2) run contains  6 bp barcoded sequences (first 6 bp are barcode in 10 bp R3 paired-end sequences). SRX098212 contains the following 2 runs with indicated barcode sequences: Run1. SRR346368 (1.8 Gb) contains two samples: ChIP-exo Reb1 (biological replicate 1, GGGCTT) and ChIP-exo Gal4 (biological replicate 1, TAGCGT).  Run2. SRR346373 (911.6 Mb) contains ChIP-exo Rap1 (ACGGAG ). Experiment3 (CTCF 3). 50 bp fragment run was performed in SRX098245 by AB SOLiD System 3.0. SRX098245 contains the following run: SRR346403 (2.3 Gb) contains ChIP-exo CTCF (biological replicate 3). Experiment4 (CTCF 2). 50 bp fragment run was performed in SRX098244 by AB SOLiD System 3.0. SRX098244 contains the following run: SRR346402 (2 Gb) contains ChIP-exo CTCF (biological replicate 2). Experiment5 (CTCF 1). 50 bp fragment run was performed in SRX098243 by AB SOLiD System 3.0. SRX098243 contains the following run: SRR346401 (2 Gb) contains ChIP-exo CTCF (biological replicate 1).