title: Illumina HiSeq 3000 paired end sequencing; Illumina HiSeq 3000 paired end sequencing; Pig in situ HiC chromosome conformation capture experiments in the liver tissue by the FAANG pilot project FR-AgENCODE
design: Paired-end in situ HiC for chromosome conformation capture in the liver tissue on an Illumina HiSeq 3000
library_construction_protocol: in situ Hi-C from Rao, 2014 protocol adapted for frozen tissue
attributes.tag: assay type
attributes.value: Hi-C
attributes.tag: sample storage
attributes.value: frozen, -70 freezer
attributes.tag: sample storage processing
attributes.value: cryopreservation in liquid nitrogen (dead tissue)
attributes.tag: sampling to preparation interval
attributes.value: 17
attributes.tag: experimental protocol
attributes.value: ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/INRA_SOP_Hi-C_HA_v1_20160610.pdf
attributes.tag: hi-c protocol
attributes.value: ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/INRA_SOP_Hi-C_HA_v1_20160610.pdf
attributes.tag: extraction protocol
attributes.value: ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/INRA_SOP_Hi-C_HA_v1_20160610.pdf
attributes.tag: library preparation location
attributes.value: GenPhySE, INRA Castanet-Tolosan, France
attributes.tag: library preparation location longitude
attributes.value: 1.499654
attributes.tag: library preparation location latitude
attributes.value: 43.527571
attributes.tag: library preparation date
attributes.value: 2016-02-04
attributes.tag: sequencing location
attributes.value: Plateforme Genomique de Toulouse, INRA Castanet-Tolosan, France
attributes.tag: sequencing location longitude
attributes.value: 1.499654
attributes.tag: sequencing location latitude
attributes.value: 43.527571
attributes.tag: sequencing date
attributes.value: 2016-07-04
attributes.tag: experiment target
attributes.value: chromatin
attributes.tag: restriction enzyme
attributes.value: HindIII
attributes.tag: restriction site
attributes.value: AAGCTT