title: Tamias alpinus exon capture sequence reads
design: Libraries were constructed according to the protocol outlined by Meyer and Kircher (2010). Transcriptome-based, multiplexed, exon capture experiments were conducted following the protocol outlined by Bi et al. (2012). Barcoded libraries for 20 historic and 20 modern T.alpinus were pooled separately by equal amounts and hybridized on one array along with Tamias Cot-1 DNA and blocking oligos.  Bi K, Vanderpool D, Singhal S, Linderoth T, Moritz C, Good JM (2012) Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales. BMC Genomics, 13, 403. Meyer M, Kircher M (2010) Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harbor Protocols, 2010, pdb.prot5448.