title: GSM4085194: KOPTK1_NOTCH1-On_H3K4me3; Homo sapiens; ChIP-Seq
library_construction_protocol: ChIP-seq libraries were constructed using a validated antibodies listed here: http://www.epigenomes.ca/data/CEMT/metadata/antibody_qc.html A customized version of paired-end sample Prep Kit from Illumina V.1.1 was used for sample preparation. Libraries were indexed, pooled and sequenced using paired-end 75nt sequencing chemistry on an Illumina HiSeq 2500 platform following the manufacturer's protocols (Illumina, Hayward, CA). The resulting sequence reads were split by index and aligned to the reference human genome (GRCh37-lite; http://www.bcgsc.ca/downloads/genomes/9606/hg19/1000genomes/bwa_ind/genome/README.GRCh37-lite) using BWA-0.5.7 aln.