Microbiome and Worm Infection: U_VS-1592-367
Shotgun metagenomic libraries were created from human stool samples of worm infected and control non-infected patients.  Data was cleaned of human contaminant using BMTagger.  Non-human reads were trimmed of adapter and filtered to remove redundancy and low quality sequence. Low complexity reads were identified and removed using DUST.  Note that filename & filename2 are paired-end fastq while filename3 represents orphaned ends produced via cleaning.