metagenome sequencing of human stool sample from mother of caesarean section born neonate around 1 hour prior to birth
Whole metagenome shotgun sequencing was performed on libraries prepared from 100 ng DNA on a NextSeq500 (Illumina). Metagenomic sequencing was performed at LCSB sequencing facility. Metagenomic reads were trimmed, human reads were removed and preprocessed reads were assembled using the integrated metaomic pipeline IMP