0hr_R_C2
RNA sequencing libraries were made using the TruSeq RNA Sample Preparation kit version 1 (Illumina) starting with 3 ug of total RNA per library.  Sequences were quality trimmed from the 3? end using Trimmomatic version 0.30 when average quality scores in sliding windows of 4 base pairs dropped below 20 or when the quality score at the end of the read dropped below 20.  Sequences less than 25 base pairs in length and unpaired reads were discarded.