Amaranth Plainsman GbS Short Read Sequence Data
GbS Sequencing    Project Name Source Lab Plate Name Well Sample Name Pedigree Population Stock Number Sample DNA Concentration Genus Species Flowcell Lane Barcode No. Sequences Comment  AMARANTH Maughan Amaranth001 A01 1 PI481125 X PI642741 RIL8 AM2X4F28_1 83.1 Amaranthus L. caudatus C295LACXX 8 CTCC 2389482   AMARANTH Maughan Amaranth001 B01 19 PI481125 X PI642742 RIL8 AM2X4F28_19 100.1 Amaranthus L. caudatus C295LACXX 8 TTCTC 1993444   AMARANTH Maughan Amaranth001 C01 39 PI481125 X PI642743 RIL8 AM2X4F28_39 64 Amaranthus L. caudatus C295LACXX 8 GCTTA 3022666   AMARANTH Maughan Amaranth001 D01 70 PI481125 X PI642744 RIL8 AM2X4F28_70 47.9 Amaranthus L. caudatus C295LACXX 8 AACGCCT 1371457   AMARANTH Maughan Amaranth001 E01 92a PI481125 X PI642745 RIL8 AM2X4F28_92a 74.5 Amaranthus L. caudatus C295LACXX 8 AGGC 1976209   AMARANTH Maughan Amaranth001 F01 115b PI481125 X PI642746 RIL8 AM2X4F28_115b 71.8 Amaranthus L. caudatus C295LACXX 8 TCGTT 1543311   AMARANTH Maughan Amaranth001 G01 134 PI481125 X PI642747 RIL8 AM2X4F28_134 71.9 Amaranthus L. caudatus C295LACXX 8 TGGCTA 3295496   AMARANTH Maughan Amaranth001 H01 168 PI481125 X PI642748 RIL8 AM2X4F28_168 63.6 Amaranthus L. caudatus C295LACXX 8 TGCTGGA 4275418   AMARANTH Maughan Amaranth001 A02 2 PI481125 X PI642749 RIL8 AM2X4F28_2 89.6 Amaranthus L. caudatus C295LACXX 8 TGCA 3151976   AMARANTH Maughan Amaranth001 B02 20 PI481125 X PI642750 RIL8 AM2X4F28_20 102.3 Amaranthus L. caudatus C295LACXX 8 AGCCC 2199758   AMARANTH Maughan Amaranth001 C02 41a PI481125 X PI642751 RIL8 AM2X4F28_41a 59.7 Amaranthus L. caudatus C295LACXX 8 CTTCCA 2615081   AMARANTH Maughan Amaranth001 D02 72 PI481125 X PI642752 RIL8 AM2X4F28_72 88.8 Amaranthus L. caudatus C295LACXX 8 AATATGC 1264594   AMARANTH Maughan Amaranth001 E02 97 PI481125 X PI642753 RIL8 AM2X4F28_97 61.2 Amaranthus L. caudatus C295LACXX 8 GATC 2032538   AMARANTH Maughan Amaranth001 F02 118 PI481125 X PI642754 RIL8 AM2X4F28_118 70.1 Amaranthus L. caudatus C295LACXX 8 ACCTAA 2510523   AMARANTH Maughan Amaranth001 G02 136 PI481125 X PI642755 RIL8 AM2X4F28_136 49.9 Amaranthus L. caudatus C295LACXX 8 ACGTGTT 1479783   AMARANTH Maughan Amaranth001 H02 172 PI481125 X PI642756 RIL8 AM2X4F28_172 53 Amaranthus L. caudatus C295LACXX 8 AACCGAGA 3325585   AMARANTH Maughan Amaranth001 A03 3 PI481125 X PI642757 RIL8 AM2X4F28_3 77.3 Amaranthus L. caudatus C295LACXX 8 ACTA 3495336   AMARANTH Maughan Amaranth001 B03 21 PI481125 X PI642758 RIL8 AM2X4F28_21 95.7 Amaranthus L. caudatus C295LACXX 8 GTATT 1878701   AMARANTH Maughan Amaranth001 C03 47 PI481125 X PI642759 RIL8 AM2X4F28_47 53.2 Amaranthus L. caudatus C295LACXX 8 GAGATA 1962225   AMARANTH Maughan Amaranth001 D03 75 PI481125 X PI642760 RIL8 AM2X4F28_75 73.1 Amaranthus L. caudatus C295LACXX 8 ACGACTAC 1351566   AMARANTH Maughan Amaranth001 E03 98 PI481125 X PI642761 RIL8 AM2X4F28_98 50.9 Amaranthus L. caudatus C295LACXX 8 TCAC 1544590   AMARANTH Maughan Amaranth001 F03 120 PI481125 X PI642762 RIL8 AM2X4F28_120 64.9 Amaranthus L. caudatus C295LACXX 8 ATATGT 1642463   AMARANTH Maughan Amaranth001 G03 140 PI481125 X PI642763 RIL8 AM2X4F28_140 62.2 Amaranthus L. caudatus C295LACXX 8 ATTAATT 1642118   AMARANTH Maughan Amaranth001 H03 173 PI481125 X PI642764 RIL8 AM2X4F28_173 62.1 Amaranthus L. caudatus C295LACXX 8 ACAGGGAA 2545686   AMARANTH Maughan Amaranth001 A04 5 PI481125 X PI642765 RIL8 AM2X4F28_5 99.9 Amaranthus L. caudatus C295LACXX 8 CAGA 2771280   AMARANTH Maughan Amaranth001 B04 24 PI481125 X PI642766 RIL8 AM2X4F28_24 97.7 Amaranthus L. caudatus C295LACXX 8 CTGTA 1696815   AMARANTH Maughan Amaranth001 C04 51 PI481125 X PI642767 RIL8 AM2X4F28_51 63 Amaranthus L. caudatus C295LACXX 8 ATGCCT 1674435   AMARANTH Maughan Amaranth001 D04 76 PI481125 X PI642768 RIL8 AM2X4F28_76 80.7 Amaranthus L. caudatus C295LACXX 8 GGTGT 1223803   AMARANTH Maughan Amaranth001 E04 100 PI481125 X PI642769 RIL8 AM2X4F28_100 63.8 Amaranthus L. caudatus C295LACXX 8 AGGAT 1473579   AMARANTH Maughan Amaranth001 F04 124 PI481125 X PI642770 RIL8 AM2X4F28_124 63.6 Amaranthus L. caudatus C295LACXX 8 ATCGTA 1549495   AMARANTH Maughan Amaranth001 G04 141 PI481125 X PI642771 RIL8 AM2X4F28_141 59.9 Amaranthus L. caudatus C295LACXX 8 ATTGGAT 1541853   AMARANTH Maughan Amaranth001 H04 174 PI481125 X PI642772 RIL8 AM2X4F28_174 63.4 Amaranthus L. caudatus C295LACXX 8 ACGTGGTA 2016135   AMARANTH Maughan Amaranth001 A05 6 PI481125 X PI642773 RIL8 AM2X4F28_6 100.1 Amaranthus L. caudatus C295LACXX 8 AACT 2112645   AMARANTH Maughan Amaranth001 B05 25 PI481125 X PI642774 RIL8 AM2X4F28_25 104.2 Amaranthus L. caudatus C295LACXX 8 ACCGT 1930736   AMARANTH Maughan Amaranth001 C05 53 PI481125 X PI642775 RIL8 AM2X4F28_53 79.1 Amaranthus L. caudatus C295LACXX 8 TATTTTT 1379720   AMARANTH Maughan Amaranth001 D05 77 PI481125 X PI642776 RIL8 AM2X4F28_77 80.4 Amaranthus L. caudatus C295LACXX 8 TAGCATGC 1298933   AMARANTH Maughan Amaranth001 E05 101 PI481125 X PI642777 RIL8 AM2X4F28_101 51.3 Amaranthus L. caudatus C295LACXX 8 ATTGA 2650181   AMARANTH Maughan Amaranth001 F05 125 PI481125 X PI642778 RIL8 AM2X4F28_125 59.4 Amaranthus L. caudatus C295LACXX 8 CATCGT 2065927   AMARANTH Maughan Amaranth001 G05 142 PI481125 X PI642779 RIL8 AM2X4F28_142 62.6 Amaranthus L. caudatus C295LACXX 8 CATAAGT 1716365   AMARANTH Maughan Amaranth001 H05 175 PI481125 X PI642780 RIL8 AM2X4F28_175 61.5 Amaranthus L. caudatus C295LACXX 8 CCATGGGT 1659665   AMARANTH Maughan Amaranth001 A06 7 PI481125 X PI642781 RIL8 AM2X4F28_7 91.9 Amaranthus L. caudatus C295LACXX 8 GCGT 1784956   AMARANTH Maughan Amaranth001 B06 26 PI481125 X PI642782 RIL8 AM2X4F28_26 67.6 Amaranthus L. caudatus C295LACXX 8 GTAA 2747139   AMARANTH Maughan Amaranth001 C06 54 PI481125 X PI642783 RIL8 AM2X4F28_54 44.8 Amaranthus L. caudatus C295LACXX 8 CTTGCTT 1034235   AMARANTH Maughan Amaranth001 D06 84 PI481125 X PI642784 RIL8 AM2X4F28_84 67.4 Amaranthus L. caudatus C295LACXX 8 AGTGGA 1625901   AMARANTH Maughan Amaranth001 E06 103 PI481125 X PI642785 RIL8 AM2X4F28_103 65.4 Amaranthus L. caudatus C295LACXX 8 CATCT 1407499   AMARANTH Maughan Amaranth001 F06 126 PI481125 X PI642786 RIL8 AM2X4F28_126 69.2 Amaranthus L. caudatus C295LACXX 8 CGCGGT 1797508   AMARANTH Maughan Amaranth001 G06 144 PI481125 X PI642787 RIL8 AM2X4F28_144 60.8 Amaranthus L. caudatus C295LACXX 8 CGCTGAT 1522676   AMARANTH Maughan Amaranth001 H06 182 PI481125 X PI642788 RIL8 AM2X4F28_182 46.3 Amaranthus L. caudatus C295LACXX 8 CGCGGAGA 2328836   AMARANTH Maughan Amaranth001 A07 11 PI481125 X PI642789 RIL8 AM2X4F28_11 102.2 Amaranthus L. caudatus C295LACXX 8 TGCGA 3054799   AMARANTH Maughan Amaranth001 B07 27 PI481125 X PI642790 RIL8 AM2X4F28_27 83 Amaranthus L. caudatus C295LACXX 8 GGTTGT 1820225   AMARANTH Maughan Amaranth001 C07 55 PI481125 X PI642791 RIL8 AM2X4F28_55 75.4 Amaranthus L. caudatus C295LACXX 8 ATGAAAC 1688832   AMARANTH Maughan Amaranth001 D07 85 PI481125 X PI642792 RIL8 AM2X4F28_85 78.8 Amaranthus L. caudatus C295LACXX 8 TAGGCCAT 842171   AMARANTH Maughan Amaranth001 E07 105 PI481125 X PI642793 RIL8 AM2X4F28_105 49 Amaranthus L. caudatus C295LACXX 8 CCTAC 1579015   AMARANTH Maughan Amaranth001 F07 127 PI481125 X PI642794 RIL8 AM2X4F28_127 60.3 Amaranthus L. caudatus C295LACXX 8 CTATTA 2213842   AMARANTH Maughan Amaranth001 G07 145 PI481125 X PI642795 RIL8 AM2X4F28_145 63.2 Amaranthus L. caudatus C295LACXX 8 CGGTAGA 2124289   AMARANTH Maughan Amaranth001 H07 186 PI481125 X PI642796 RIL8 AM2X4F28_186 50 Amaranthus L. caudatus C295LACXX 8 CGTGTGGT 1775399   AMARANTH Maughan Amaranth001 A08 13 PI481125 X PI642797 RIL8 AM2X4F28_13 104.2 Amaranthus L. caudatus C295LACXX 8 CGAT 2393937   AMARANTH Maughan Amaranth001 B08 28 PI481125 X PI642798 RIL8 AM2X4F28_28 80 Amaranthus L. caudatus C295LACXX 8 CCAGCT 1991750   AMARANTH Maughan Amaranth001 C08 62 PI481125 X PI642799 RIL8 AM2X4F28_62 80.7 Amaranthus L. caudatus C295LACXX 8 AAAAGTT 1685346   AMARANTH Maughan Amaranth001 D08 86 PI481125 X PI642800 RIL8 AM2X4F28_86 57.1 Amaranthus L. caudatus C295LACXX 8 TGCAAGGA 1960450   AMARANTH Maughan Amaranth001 E08 106 PI481125 X PI642801 RIL8 AM2X4F28_106 49.3 Amaranthus L. caudatus C295LACXX 8 GAGGA 1769527   AMARANTH Maughan Amaranth001 F08 128 PI481125 X PI642802 RIL8 AM2X4F28_128 60.7 Amaranthus L. caudatus C295LACXX 8 GCCAGT 1723763   AMARANTH Maughan Amaranth001 G08 153 PI481125 X PI642803 RIL8 AM2X4F28_153 57 Amaranthus L. caudatus C295LACXX 8 CTACGGA 2297194   AMARANTH Maughan Amaranth001 H08 187 PI481125 X PI642804 RIL8 AM2X4F28_187 45.9 Amaranthus L. caudatus C295LACXX 8 GCTGTGGA 2278731   AMARANTH Maughan Amaranth001 A09 15 PI481125 X PI642805 RIL8 AM2X4F28_15 103.2 Amaranthus L. caudatus C295LACXX 8 CGCTT 2200451   AMARANTH Maughan Amaranth001 B09 30a PI481125 X PI642806 RIL8 AM2X4F28_30a 101 Amaranthus L. caudatus C295LACXX 8 TTCAGA 2157274   AMARANTH Maughan Amaranth001 C09 63 PI481125 X PI642807 RIL8 AM2X4F28_63 57.8 Amaranthus L. caudatus C295LACXX 8 GAATTCA 2368627   AMARANTH Maughan Amaranth001 D09 88 PI481125 X PI642808 RIL8 AM2X4F28_88 72.9 Amaranthus L. caudatus C295LACXX 8 TGGTACGT 1608619   AMARANTH Maughan Amaranth001 E09 107 PI481125 X PI642809 RIL8 AM2X4F28_107 61.5 Amaranthus L. caudatus C295LACXX 8 GGAAC 1625000   AMARANTH Maughan Amaranth001 F09 129 PI481125 X PI642810 RIL8 AM2X4F28_129 62.4 Amaranthus L. caudatus C295LACXX 8 GGAAGA 2422657   AMARANTH Maughan Amaranth001 G09 158 PI481125 X PI642811 RIL8 AM2X4F28_158 75.4 Amaranthus L. caudatus C295LACXX 8 GCGGAAT 2159979   AMARANTH Maughan Amaranth001 H09 189a PI481125 X PI642812 RIL8 AM2X4F28_189 62 Amaranthus L. caudatus C295LACXX 8 GGATTGGT 1656728   AMARANTH Maughan Amaranth001 A10 16 PI481125 X PI642813 RIL8 AM2X4F28_16 98.2 Amaranthus L. caudatus C295LACXX 8 TCACC 2520177   AMARANTH Maughan Amaranth001 B10 31 PI481125 X PI642814 RIL8 AM2X4F28_31 78.4 Amaranthus L. caudatus C295LACXX 8 TAGGAA 2374039   AMARANTH Maughan Amaranth001 C10 66 PI481125 X PI642815 RIL8 AM2X4F28_66 78.4 Amaranthus L. caudatus C295LACXX 8 GAACTTC 1446463   AMARANTH Maughan Amaranth001 D10 BLANK Empty inbred NA NA Amaranthus L. caudatus C295LACXX 8 TCTCAGTC 3143 Failed; Negative sequencing control  AMARANTH Maughan Amaranth001 E10 111 PI481125 X PI642817 RIL8 AM2X4F28_111 50.9 Amaranthus L. caudatus C295LACXX 8 GTCAA 2090882   AMARANTH Maughan Amaranth001 F10 130 PI481125 X PI642818 RIL8 AM2X4F28_130 53 Amaranthus L. caudatus C295LACXX 8 GTACTT 1708720   AMARANTH Maughan Amaranth001 G10 159 PI481125 X PI642819 RIL8 AM2X4F28_159 44.2 Amaranthus L. caudatus C295LACXX 8 TAGCGGA 2629107   AMARANTH Maughan Amaranth001 H10 PI481125  inbred PI 481125 60.1 Amaranthus L. hypochondriacus C295LACXX 8 GTGAGGGT 2162196   AMARANTH Maughan Amaranth001 A11 17 PI481125 X PI642821 RIL8 AM2X4F28_17 97 Amaranthus L. caudatus C295LACXX 8 CTAGC 2665521   AMARANTH Maughan Amaranth001 B11 32 PI481125 X PI642822 RIL8 AM2X4F28_32 82.5 Amaranthus L. caudatus C295LACXX 8 GCTCTA 2532075   AMARANTH Maughan Amaranth001 C11 67 PI481125 X PI642823 RIL8 AM2X4F28_67 74.8 Amaranthus L. caudatus C295LACXX 8 GGACCTA 2309835   AMARANTH Maughan Amaranth001 D11 89 PI481125 X PI642824 RIL8 AM2X4F28_89 46.5 Amaranthus L. caudatus C295LACXX 8 CCGGATAT 1159732   AMARANTH Maughan Amaranth001 E11 112 PI481125 X PI642825 RIL8 AM2X4F28_112 47.7 Amaranthus L. caudatus C295LACXX 8 TAATA 2176954   AMARANTH Maughan Amaranth001 F11 131 PI481125 X PI642826 RIL8 AM2X4F28_131 50.6 Amaranthus L. caudatus C295LACXX 8 GTTGAA 1659984   AMARANTH Maughan Amaranth001 G11 166 PI481125 X PI642827 RIL8 AM2X4F28_166 52.7 Amaranthus L. caudatus C295LACXX 8 TCGAAGA 2919758   AMARANTH Maughan Amaranth001 H11 PI642741 Oscar Blanco inbred PI 642741 31.2 Amaranthus L. caudatus C295LACXX 8 TATCGGGA 3223379   AMARANTH Maughan Amaranth001 A12 18 PI481125 X PI642829 RIL8 AM2X4F28_18 104.7 Amaranthus L. caudatus C295LACXX 8 ACAAA 2830292   AMARANTH Maughan Amaranth001 B12 35 PI481125 X PI642830 RIL8 AM2X4F28_35 49.4 Amaranthus L. caudatus C295LACXX 8 CCACAA 2966780   AMARANTH Maughan Amaranth001 C12 69 PI481125 X PI642831 RIL8 AM2X4F28_69 81.5 Amaranthus L. caudatus C295LACXX 8 GTCGATT 1185380   AMARANTH Maughan Amaranth001 D12 90 PI481125 X PI642832 RIL8 AM2X4F28_90 49.5 Amaranthus L. caudatus C295LACXX 8 CGCCTTAT 931685   AMARANTH Maughan Amaranth001 E12 114 PI481125 X PI642833 RIL8 AM2X4F28_114 56.9 Amaranthus L. caudatus C295LACXX 8 TACAT 39677 Failed; DNA concentration >10ng/uL  AMARANTH Maughan Amaranth001 F12 132 PI481125 X PI642834 RIL8 AM2X4F28_132 77.8 Amaranthus L. caudatus C295LACXX 8 TAACGA 2610104   AMARANTH Maughan Amaranth001 G12 167 PI481125 X PI642835 RIL8 AM2X4F28_167 73.4 Amaranthus L. caudatus C295LACXX 8 TCTGTGA 4086029   AMARANTH Maughan Amaranth001 H12 Plainsman  inbred PI 558499 33.2 Amaranthus L. hypochondriacus C295LACXX 8 TTCCTGGA 4705060