title: NGS sequencing data for Scutellaria tsinyunensis
design: The fresh leaves of S. tsinyunensis were collected from the Mt. Jinyun, Chongqing. The total genomic DNA was extracted by using CTAB method. The DNA library with an insert size of 350 bp was constructed using the NEBNext library building kit and sequenced by using the Hiseq Xten PE150 sequencing platform.