alias: 40419
title: Patient A7 Breast Cancer Rib Metastasis Whole Exome Seq
design: DNA was prepared for sequencing with the Agilent SureSelect XT library protocol (Santa Clara, CA). Fresh-frozen tumors were processed according to manufacturer's protocol 3ug input, while FFPE tumors were processed with the low-volume input according to manufacturer's protocol for 200 ng input. DNA library was captured and amplified with Agilent SureSelect Human All Exon v5 (Santa Clara, CA) according to the manufacturer's protocol.
identifiers.namespace: UNC-LCCC
identifiers.id: 40419
attributes.tag: sample_ID
attributes.value: A7-RIB-MET-DNA
attributes.tag: alignment_software
attributes.value: Alignment was performed with BWA 0.7.9a52, realigned with ABRA v0.9653, processed by biobambam254. Viral alignments were counted with samtools55 and BEDTools-Version-2.15.0. CADABRA SomaticLocusCaller was employed for further filtration. 