alias: "NCI_38 WXS - Normal, peripheral blood mononuclear cells"
title: "Normal WXS in patients with small cell cancer, peripheral blood mononuclear cells": Sample NCI_38
design: "Peripheral blood DNA extracted from individual patients was used for germline exome sequencing. In brief, raw sequencing data in FASTQ format were aligned against the reference human genome (hg19) with BWA. The Genome Analysis Toolkit (GATK) and HaplotypeCaller (HAPLOC) were used for germline SNV and indel calling; whereas Strelka was used for somatic single nucleotide variant (SNV) and small indel calling. ANNOVAR was used to functionally annotate genetic variants. "
identifiers.namespace: NIH-phs002327
identifiers.id: "NCI_38 WXS - Normal, peripheral blood mononuclear cells"
attributes.tag: alignment_software
attributes.value: ClinOmics somatic Bioinformatic Pipeline v3.1