alias: E-MTAB-8447:T_007 rep2_p
title: Illumina HiSeq 4000 paired end sequencing; ATAC-seq of oesophageal adenocarcinoma patient samples
design: ATAC-seq of oesophageal adenocarcinoma patient samples
library_construction_protocol: Biopsies were collected from consenting patients and snap frozen.  Biopsies were minced with a scalpel and lysed in ATAC lysis buffer and Tn5 reactions were performed as described in \"An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues\" Corces et al (2017) https://www.nature.com/articles/nmeth.4396 Libraries were constructed by amplifying transposed DNA with Illumina Nextera adapters as described in \"An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues\" Corces et al (2017) https://www.nature.com/articles/nmeth.4396
identifiers.namespace: UNIVERSITY OF MANCHESTER
identifiers.id: E-MTAB-8447:T_007 rep2_p
attributes.tag: Experimental Factor: individual
attributes.value: 1