alias: VIC9756_illumina
title: Severe acute respiratory syndrome coronavirus 2
design: ARTIC v3, minimap2 v2.17, ivar v1.2.2, samtools v1.10. Using minimap2, short reads mapped to SARS-CoV-2 NCBI accession MN908947.3. Using samtools, proper_pairs (samflag 2) mapping to MN908947.3 retained, unmapped reads (samflag 4) discarded (to filter out non-SARS-CoV-2 cDNA). Filtered reads submitted to NCBI
identifiers.namespace: SUB8243070
identifiers.id: VIC9756_illumina