alias: GSM5176321
title: GSM5176321: WT cortex 5 prime; Mus musculus; RNA-Seq
library_construction_protocol: Surgically resected cortical or retinal tissues were homogenized using a glass dounce homogenizer in 2 ml of ice-cold Nuclei EZ lysis buffer (#EZ PREP NUC-101, Sigma) and was incubated on ice for 5 min. Nuclei were centrifuged at 500 × g for 5 min at 4 °C, washed with 4 ml ice-cold Nuclei EZ lysis buffer and, incubated on ice for 5 min. Nuclei were centrifuged at 500 × g for 5 min at 4 °C. After centrifugation, the nuclei were resuspended in 1 ml of nuclei suspension buffer (NSB) consisting of 1XPBS, 1%BSA (#AM2618, Thermo Fisher Scientific) and 0.2U/ul RNAse inhibitor (#AM2694, Thermo Fisher Scientific) and were filtered through a 40-μm Flowmi Cell Strainer (#H13680-0040, Bel-Art). Nuclei concentration was determined using 0.4% Trypan Blue (#15250061, Thermo Fisher Scientific). Final concentration of 1000 nuclei/μl was adjusted with NSB. Droplet-based snRNA-seq libraries were prepared using the Chromium Single Cell 3' v2 according to the manufacturer's protocol while single cell rna-seq libraries were prepared using the Chromium Single Cell 5'  kit
identifiers.namespace: GEO
identifiers.id: GSM5176321
attributes.tag: GEO Accession
attributes.value: GSM5176321