alias: E-MTAB-6448:uq_2013218002.2_RNA_p
title: Illumina HiSeq 4000 paired end sequencing; Whole exome sequencing and transcription profiling of a patient cohort of oral cavity squamous cell carcinomas
design: Whole exome sequencing and transcription profiling of a patient cohort of oral cavity squamous cell carcinomas
library_construction_protocol: Fresh tissue samples were collected and stored in RNAlater (Invitrogen, ThermoFisher Scientific) at -80°C. Acronyms used: MDSCC: moderately differentiated squamous-cell carcinoma; PDSCC: poorly differentiated squamous-cell carcinoma; WDSCC: well differentiated squamous-cell carcinoma; RTM: retromolar triangle; FOM: mouth floor RNA was extracted using the Qiagen RNeasy Mini Kit according to manufacturer's instructions. Low Throughput Illumina TruSeq RNA Sample Preparation Kit v2
identifiers.namespace: The University of Queensland Diamantina Institute
identifiers.id: E-MTAB-6448:uq_2013218002.2_RNA_p
attributes.tag: Experimental Factor: individual
attributes.value: 2014338002
attributes.tag: Experimental Factor: disease staging
attributes.value: T2N0M0
attributes.tag: Experimental Factor: protocol
attributes.value: RNA-Seq