title: Illumina HiSeq 3000 paired end sequencing; Hi-C in pig fetal muscle, 90 days of gestation
design: Paired-end in situ Hi-C for chromosome conformation capture in fetal pig muscle at 90 days of gestation on an Illumina HiSeq 3000
library_construction_protocol: in situ HiC from Rao, 2014 protocol adapted for frozen tissue
attributes.tag: project
attributes.value: FAANG
attributes.tag: assay type
attributes.value: Hi-C
attributes.tag: sample storage
attributes.value: frozen, -70 freezer
attributes.tag: sample storage processing
attributes.value: cryopreservation in liquid nitrogen (dead tissue)
attributes.tag: sampling to preparation interval
attributes.value: 13.0
attributes.tag: experimental protocol
attributes.value: https://data.faang.org/api/fire_api/assays/INRAE_SOP_Hi-C_pig_muscle_tissue_20200812.pdf
attributes.tag: extraction protocol
attributes.value: https://data.faang.org/api/fire_api/assays/INRAE_SOP_Hi-C_pig_muscle_tissue_20200812.pdf
attributes.tag: library preparation location
attributes.value: GenPhySE, INRAE Toulouse, Castanet Tolosan, France
attributes.tag: library preparation location longitude
attributes.value: 1.499654
attributes.tag: library preparation location latitude
attributes.value: 43.527571
attributes.tag: library preparation date
attributes.value: 2016-03
attributes.tag: sequencing location
attributes.value: Plateforme GÃ©nomique de Toulouse, INRAE Toulouse, Castanet Tolosan, France
attributes.tag: sequencing location longitude
attributes.value: 50.499654
attributes.tag: sequencing location latitude
attributes.value: 92.527571
attributes.tag: sequencing date
attributes.value: 2017-11-07
attributes.tag: experiment target
attributes.value: chromatin
attributes.tag: restriction enzyme
attributes.value: HindIII
attributes.tag: restriction site
attributes.value: AAGCTAGCTT
attributes.tag: hi-c protocol
attributes.value: https://data.faang.org/api/fire_api/assays/INRAE_SOP_Hi-C_pig_muscle_tissue_20200812.pdf