Illumina NovaSeq 6000 paired end sequencing; Whole genome sequencing of pig for gene annotation and genetic analysis.WGS data was generated to support annotation of coding and non-coding genes and and of regulatory elements. This study is part of the FAANG project, promoting rapid prepublication of data to support the research community. These data are released under Fort Lauderdale principles, as confirmed in the Toronto Statement (Toronto International Data Release Workshop. Birney et al. 2009. Pre-publication data sharing. Nature 461:168-170). Any use of this dataset must abide by the FAANG data sharing principles. Data producers reserve the right to make the first publication of a global analysis of this data. If you are unsure if you are allowed to publish on this dataset, please contact elisabetta.giuffra@inrae.fr, sylvain.foissac@inrae.fr and faang@iastate.edu to enquire. The full guidelines can be found at http://www.faang.org/data-share-principle”.
WGS experiment on an Illumina Novaseq 6000 for gene annotation and genetic analysis. WGS data was generated to support annotation of coding and non-coding genes and and of regulatory elements. This study is part of the FAANG project, promoting rapid prepublication of data to support the research community. These data are released under Fort Lauderdale principles, as confirmed in the Toronto Statement (Toronto International Data Release Workshop. Birney et al. 2009. Pre-publication data sharing. Nature 461:168-170). Any use of this dataset must abide by the FAANG data sharing principles. Data producers reserve the right to make the first publication of a global analysis of this data. If you are unsure if you are allowed to publish on this dataset, please contact elisabetta.giuffra@inrae.fr, sylvain.foissac@inrae.fr and faang@iastate.edu to enquire. The full guidelines can be found at http://www.faang.org/data-share-principle”.
https://data.faang.org/api/fire_api/experiments/INRAE_SOP_FRAGENCODE_WGS_library_preparation_20210416.pdf
project
FAANG
assay type
whole genome sequencing assay
sample storage
frozen, -70 freezer
sample storage processing
cryopreservation in liquid nitrogen (dead tissue)
sampling to preparation interval
131.0
experimental protocol
https://data.faang.org/api/fire_api/experiments/INRAE_SOP_FRAGENCODE_WGS_library_preparation_20210416.pdf
extraction protocol
https://data.faang.org/api/fire_api/experiments/INRAE_SOP_FRAGENCODE_DNA_extraction_20210416.pdf
library preparation location
GeT-PlaGe, 24 Chemin de Borde Rouge, 31326 Castanet-Tolosan France
library preparation location longitude
1.50072
library preparation location latitude
43.5279
library preparation date
2018-01
sequencing location
GeT-PlaGe, 24 Chemin de Borde Rouge, 31326 Castanet-Tolosan France
sequencing location longitude
1.50072
sequencing location latitude
43.5279
sequencing date
2018-04-16
experiment target
input DNA
library generation pcr product isolation protocol
https://data.faang.org/api/fire_api/experiments/INRAE_SOP_FRAGENCODE_WGS_library_preparation_20210416.pdf
library generation protocol
https://data.faang.org/api/fire_api/experiments/INRAE_SOP_FRAGENCODE_WGS_library_preparation_20210416.pdf
library selection
none