title: NextSeq 500 paired end sequencing; SHOME-BIO (SHOtgun MEtagenomic analysis of BIOlogical entities): from reads to pathogens. A specific and exhaustive pipeline for handling metagenomic shotgun sequencing data.
design: SHOME-BIO (SHOtgun MEtagenomic analysis of BIOlogical entities): from reads to pathogens. A specific and exhaustive pipeline for handling metagenomic shotgun sequencing data.
library_construction_protocol: Biopsy from animal tissue. DNA extraction protocol from Qiagen kit Illumina Nextera XT DNA kit was used for library construction