title: Probe capture of Severe acute respiratory syndrome coronavirus 2: Bronchoalveolar lavage
design: Total RNA isolation using the Qiagen RNeasy Mini Kit. Quantification of viral RNA using a RT-qPCR targeting the SARS-CoV-2 N-gene. Viral RNA enrichment and preparation using the Illumina RNA Prep and Enrichment with the Respiratory Viral Oligo Panel. Sequencing of multiplexed libraries using the Illumina MiniSeq platform. Bionformatic analysis of paired-end raw sequence reads.