title: GSM5471883: Duroc rep1_ATAC; Sus scrofa; ATAC-seq
library_construction_protocol: ATAC-seq: The original Illumina high-throughput sequencing image data files were converted into original sequences after base group recognition by bcl2fastq software. The results were stored in FASTQ file format. Trimmomatic (v0.36) software was used to filter the original sequences to obtain high quality clean reads, and Bowtie2 software was used to compare the sequencing sequences with the reference genome (Sus scrofa 11.1).  RNA-seq: Transcriptome data were assembled using Stringtie and compared with the reference genome (Sus scrofa 10.2) using CuffCompare. DNA and RNA libraries were prepared for sequencing using standard Illumina protocols.