title: GSM5590089: Tiled-C_P2-CTCF-KO_CD41_bioRep_E9.1_seqRun2; Mus musculus; OTHER
library_construction_protocol: Tiled-C: (Oudelaar et al 2020). Poly-A-minus RNA-seq: Qiazol + miRNeasy Mini kit, RiboMinus Eukaryote System v2, NEBNext Ultra directional library prep kit + poly A selection module (NEB). ATAC-seq: (Buenrostro et al., 2013). CTCF ChIP-seq: Millipore ChIP agarose kit. Bisulfite-seq: (Jeziorska et al 2017) Tiled-C/RNA-seq/ChIP-seq/Bisulfite-seq: NEBNext Ultra II. ATAC-seq: Tn5 and custom PCR primers (Buenrostro et al., 2013)