title: WGS of Escherichia coli: stool
design: DNA libraries were prepared using the Nextera XT Library Preparation Kit and Nextera XT v2 Indexes (Illumina) and sequencing was performed at the Pathogen Genomics Unit, Centre for Infectious Disease and Microbiology  Public Health, Westmead Hospital. Error rates were calculated using PhiX Sequencing Control v3 for each run. Demultiplexing and FastQC generation was performed automatically by BaseSpace (Illumina).