title: GSM5741388: Cdc14a KO clon 3 time 2; Mus musculus; RNA-Seq
library_construction_protocol: Samples were collected at day 0, 2 and 7 of the differentiation protocol. RNA was extracted with miRVana RNA isolation kit (Ambion) Total RNA samples were used (500 ng on average). Sequencing libraries were prepared with the "QuantSeq 3' mRNA-Seq Library Prep Kit (FWD) for Illumina" (Lexogen, Cat.No. 015) by following manufacturer instructions. Library generation is initiated by reverse transcription with oligodT priming, and a second strand synthesis is performed from random primers by a DNA polymerase. Primers from both steps contain Illumina-compatible sequences. Libraries are completed by PCR {This kit generates directional libraries stranded in the sense orientation (the read1 (the only read in single read format) has the sense orientation (--library-type fr-secondstrand in TopHat, --stranded=yes in HTSeq).}  cDNA libraries are purified, applied to an Illumina flow cell for cluster generation and sequenced on an Illumina instrument (see below) by following manufacturer's protocols. Quantseq 3'UTR