title: Illumina NovaSeq 6000 paired end sequencing; RNA-Seq of control and RNPS1 knockdown with or without RNPS1 wildtype or RNPS1-RRM domain rescue in Flp-In T-REx 293 cells
design: RNA-Seq of control and RNPS1 knockdown with or without RNPS1 wildtype or RNPS1-RRM domain rescue in Flp-In T-REx 293 cells
library_construction_protocol: Flp-In 293 T-REx (Thermo Fisher Scientific) cells were maintained at 37° C, 5% CO2 and 90% humidity in Dublecco's Modified Eagle Medium (DMEM, Thermo Fisher Scientific) supplemented with 9% fetal bovine serum (FBS) and Penicillin-Streptomycin (both Thermo Fisher Scientific). For siRNA transfection, cells were reverse transfected with 60 pmol siRNA targeting RNPS1 (or Luc in the negative control) per 2-3 x 10^5 cells using 2.5 μl Lipofectamine RNAiMAX. Total RNA was extracted using RNA Solv Reagent (Omega Bio-Tek), followed by using the DIRECTzol Miniprep Kit (Zymo Research) according to the manufacturer's instructions. Ribosomal depletion and strand specific library preparation was carried out with TruSeq Stranded Total RNA (with Ribo-Zero Gold) according to the manufacturer's instructions.
attributes.tag: Experimental Factor: phenotype
attributes.value: expression of RRM domain of RNPS1