Whole Exome of Homo sapiens: Primary ovarian tumor cells (ST.028.M.FFPE)
DNA and RNA were extracted from FF or FFPE tissues using Qiagens DNeasy Blood & Tissue Kit and RNeasy kit.  Whole exome sequencing of DNA from matched primary tumor, metastatic tumors, and normal tissue samples was completed for 39 patients with the NimbleGen VCRome exome capture kit (NimbleGen Roche) according to the manufacturers protocol. Paired-end Illumina 151 bp reads were generated for normal samples to a minimum of depth of 65x, while tumor samples were sequenced to a minimum of 139x, with the average coverage of ~300x. Exome sequencing data were aligned to human reference build GRCh37 using BWA-mem and deduplicated with Picard version 1.113.