title: Altered infective proficiency of the gut microbiome in COVID-19
design: Libraries were prepared using a dual barcoding system, and sequenced at 150bp paired-end on a Illumina NextSeq 500 machine. All raw reads were quality trimmed and filtered against the human genome hg19 to exclude host sequences, metatranscriptomics reads were additionaly filtered for rRNA reads. Both steps were done using the IMP pipeline (PMID:27986083).
library_name: COINF_PRED0305_MT