title: WGS of E. coli
design: Long-read sequencing was performed on a MinION MK1B sequencing device (ONT, U.K.). Library preparation was carried out according to the manufacturers protocol, using the ligation sequencing kit (SQK-LSK109) and Native Barcoding Expansion Kits (EXP-NBD104; all ONT). Sequencing was carried out using a FLOW-MIN106 R9.4.1 flow cell (ONT), the libraries were loaded as a pool containing 12 sample libraries in total.