DNA-seq of phage DAPP2
Genomic DNA sample was fragmented using an enzymatic approach (NEB Ultra II FS kit). Resulting DNA fragments were size selected (200  700bp), using AMPure XP beads, the fragments were end repaired and Illumina specific adapter sequences were ligated to each fragment. Each sample was individually indexed, and a second size selection step was performed. Samples were then quantified, using a fluorometric method, diluted to a standard concentration (4nM) and then sequenced on Illuminas NextSeq500 platform, using a NextSeq mid out kit (300 cycle), following a standard protocol as described by the manufacturer. 2x150bp paired-end read data was produced for each sample