title: ITS2 gastrointestinal nematode metabarcoding from Australian caprine faeces: sample G6 (L3)
design: PCR amplicons (25L) were submitted for Illumina NGS at the Ramaciotti Centre for Genomics, University of New South Wales, Sydney, Australia. Here, Stage-2 indexing PCRs (involving the attachment of Illumina sequencing adaptors and dual index barcodes using the Nextera XT Index Kit V2), library quantification, normalisation, pooling, and denaturing were performed according to Illuminas 16S Metagenomic Sequencing Library Preparation (Illumina Inc., USA). Sequencing runs were undertaken on an Illumina MiSeq platform with 2x250bp paired end reads.