title: PCGA-01-0021-086-19077-00134BR-1007322R
design: Total RNA was extracted from endobronchial biopsies and bronchial brushings using the miRNeasy Mini Kit or AllPrep DNA-RNA-miRNA Universal Kit (Qiagen). Sequencing libraries were prepared from total RNA samples using the Illumina TruSeq RNA Kit v2 and multiplexed in groups of four using the Illumina TruSeq Paired-End Cluster Kit.  Each sample was sequenced on the Illumina HiSeq 2500 to generate paired-end 100-nucleotide reads. Demultiplexing and creation of FASTQ files were performed using Illumina CASAVA 1.8.2 or BaseSpace.  The data and analysis are described in Beane et al., Nature Communications 2019 (PubMed ID 31015447).