title: Resistant Clone 13
design: Eight naive clones, one original clone, and sixteen resistant clones were sequenced at 30X depth with paired end Illumina sequencing. FASTQs were pre-processed and aligned to hg38 based on GATK4 best practices using an open-source WGS pipeline, Sarek v.3.0 10. Variant calling was performed using the GATK HaplotypeCaller