design: DNA was isolated using the Wizard HMW DNA Extraction Kit from Promega. For Illumina sequencing, 1 g DNA was sent to a service provider (Azenta Life Sciences GENEWIZ, South Plainfield, NJ), where the libraries were created using the NEBNext Ultra II DNA Library Prep Kit for Illumina and the isolates were sequenced to approximately 1 Gb depth per sample using a 2 x 150 bp configuration.