GBS of Zea mays: W23 Ab10 I, W23 Ab10 II, W23 N10
Abnormal chromosome 10 (Ab10) I and II were marked by an allele of the colored1 gene (R1) which makes the kernels purple. Normal chromosome 10 (N10) was marked by a different allele of the colored1 gene (r1) which makes the kernels yellow. Kernel color was the only method of genotyping used. There is an approximately 2% chance of recombination between Ab10 and R1. We extracted genomic DNA from Ab10 positive and N10 kernels using a CTAB extraction. Using these DNA samples, GBS libraries were prepared and sequenced on an Illumina HiSeq 2000 in accordance with https://doi.org/10.1371/journal.pone.0019379 by the Genomic Diversity Facility, Cornell University. This is the raw multiplexed file (for ease of use with GBS specific tools such as TASSEL https://doi.org/10.1093/bioinformatics/btm308).  Refer to https://github.com/dawelab/CDH_Distribution_In_Maize for a full sample description and the key used to demultiplex the fastq file.