Salminus brasiliensis, Upper Parana isolate, alignment  of short-reads to the resulting chromosome-level genome of LARGE130547 - principal pseudohaplotype (Hap2)
90 bases PE reads from a 500 bp wgs library were aligned to a S. brasiliensis reference genome, and used to obtain a sample consensus. This new genome was used for aligning the original reads back to it (this here result - principal pseudohaplotype).