title: GSM9057980: C1; Mus musculus; RNA-Seq
library_name: GSM9057980
library_construction_protocol: 28 days post infection joint-associated tissue was collected from the ipsilateral ankle and a single cell suspension was generated by mechanical and enzymatic digestion. Cells were assayed using the 10x Genomics Next GEM single-cell 3' expression kit according to manufacturer's instructions. scRNA-seq libraries were enriched for molecules aligning to the CHIKV genome using previously published methods. The unenriched and CHIKV-enriched libraries were sequenced separately on an Illumina NovaSeq 6000.