title: WGS of Clostridioides difficile: stool samples
design: DNA was extracted from C. difficile colonies after 48h incubation using the Qiagen Dneasy UltraClean Microbial kit. Library preparation was done with the Nextera XT DNA library prep kit from Illumina and sequencing was performed using Illumina Miseq reagent kit v3, according to manufacturers instructions.