title: GSM8729557: Bulk_RNA-seq_Hippocampus, WT, KD, n3; Mus musculus; RNA-Seq
library_name: GSM8729557
library_construction_protocol: Total RNA was extracted with TRIzol (Invitrogen) and chloroform (Invitrogen). RNA was then purified with the RNeasy mini kit (Qiagen) according to manufacturer's instructions. 500ng of total RNA was used for RNA-sequencing libraries preparation. RNA quality control was assessed with the Bioanalyzer RNA 6000 Nano assay on the 2100 Bioanalyzer system (Agilient technologies) and all samples had a RIN above 8. Library preparation was done with the KAPA mRNAseq Hyperprep kit (KAPA, Cat no. KK8581). Ligation was made with 38 nM final concentration of Illumina dual-index UMI (IDT) and 11 PCR cycles was required to amplify cDNA libraries. Libraries were quantified by QuBit and BioAnalyzer DNA1000. All libraries were diluted to 10 nM and normalized by qPCR using the KAPA library quantification kit (KAPA; Cat no. KK4973). Libraries were pooled to equimolar concentration
identifiers.namespace: GEO
identifiers.id: GSM8729557_r1