design: Total RNA was extracted from the indicated strains and conditions 10 minutes post phage infection using TRIzol. The integrity of the total cellular RNA was evaluated using RNA tape of Agilent TapeStation 2200 before library preparation. All RNA samples were of high integrity with a RIN score of 7.0 or more. rRNA was first depleted from 500 ng of each sample using MICROBExpress Kit (AM1905, Fisher) following the manufactures instruction. The rRNA-depleted total RNA was subjected to library preparation using NEBNext Ultra II RNA Library Prep Kit (E7700, New England Biolabs) and barcoded with NEBNext Multiplex Oligos for Illumina (E7730, New England Biolabs) following the manufacturers instructions. The libraries were pooled with equal amounts of moles, further sequenced using MiSeq Reagent V3 (MS-102-3003, Illumina) for pair-ended, 600-bp reads