title: GSM8976701: Cebpa Fl/Fl, Spc-CreER, iSuReCre, Perinatal_1a (ATAC-seq); Mus musculus; ATAC-seq
library_construction_protocol: Cells from PN25 SftpcCreER;iSuReCre;Cebpawt/fl and SftpcCreER;iSuReCre;Cebpafl/fl mice (2 weeks after TMX) were isolated and enriched (EpCAM+) as per protocol described below. Raw sequencing reads were trimmed of sequencing adapters and bad quality bases with cutadapt version 2.8 in Trim Galore version 0.6.6 using default parameters. Bowtie2 version 2.5.0 (parameters: --end-to-end --very-sensitive --no-mixed --no-discordant --phred33 -I 10 -X 700) was used to map trimmed reads to the reference genome Mus_musculus.GRCm38.
identifiers.namespace: GEO
identifiers.id: GSM8976701_r1