UCE sequence reads of Tropicoperdix chloropus: adult male
We prepared Illumina TruSeq libraries using the manufacturerŐs protocol (Illumina Inc., San Diego, CA, USA), which was modified to use primers with custom index tags (Faircloth and Glenn 2012). Libraries were enriched for 5060 UCE loci targeted using a set of 5472 probes (Mycroarray, Ann Arbor, MI; http://www.mycroar- ray.com/mybaits/mybaits-UCEs.html). We generated 100nt paired-end reads using an Illumina (San Diego, CA) HiSeq 2500.