Utility of whole-genome sequencing to ascertain locally acquired cases of coccidioidomycosis
DNA samples were  prepared for paired-end sequencing using the Kapa Biosystems library  preparation kit (Woburn, MA, USA) protocol with an 8bp index modification and  sequenced to a read length of 100bp or 250bp on the Illumina HiSeq or to  250bp on the Illumina MiSeq.