"ChIP of Methanocaldococcus jannaschii transcription machinery: library 2, Rpo4/7 replicate 3"
ChIP experiment  with antibody against Mja Rpo4/7 used to make sequencing libraries using NEBNext kit and NEBNext muliplex oligos including a size fraction ~250 bp. After sequencing aligned to M. jannaschii genome using Bowtie with options -n 0 and rest set to default.