whole genome sequencing of Salmonella: animal isolate
Bacterial isolates were grown overnight, and bacterial DNA was extracted using the QIAGEN Genomic-tip 100/G (Quiagen). 1D Native barcoding genomic DNA, with EXP-NBD103 and SQK-LSK109 (Oxford Nanopore Technologies) was used to prepare the library for sequencing with MinIon device.