Ethiopian ATS 3
Read numbers were the following: 77065 for LMH-1 for sample , 60265 for LMH-10 and 67937 for LMH-2 and 58532 for ATS-3 sample (BF). Primary data analysis (base-calling) was carried out with Bbcl2fastq^ software (v2.17.1.14, Illumina). Reads were quality and length trimmed in CLC Genomics Workbench Tool 9.5.1 using an error probability of 0.05 (Q13) and a minimum length of 50 nucleotides as threshold. Trimmed sequences were processed using mothur v1.35 (Schloss et al., 2009) as recommended by the MiSeq SOP page