GSM1243356: B2_RNASeq; Brassica rapa subsp. pekinensis; RNA-Seq
Total RNA was isolated using Trizol reagent according to the manufacturer’s protocol (Sigma-Aldrich, Inc., USA) and treated with RNase-free DNase to remove any genomic DNA contaminants. The purity of extracted RNA were assessed by ratio of absorbance A260 to A280, using a NanoDrop ND-1000 spectrophotometer (Thermo Fisher Scientiﬁc Inc., Waltham, MA, USA). mRNA is enriched by using the oligo(dT) magnetic beads from the total RNA. Adding the fragmentation buffer, the mRNA is interrupted to short fragments (about 200 bp), then the first strand cDNA is synthesized by random hexamer-primer using the mRNA fragments as templates. Buffer, dNTPs, RNase H and DNA polymerase I are added to synthesize the second strand. The double strand cDNA is purified with QiaQuick PCR extraction kit and washed with EB buffer for end repair and single nucleotide A (adenine) addition. Finally, sequencing adaptors are ligated to the fragments. The required fragments is purified by agrose gel electrophoresis and enriched by PCR amplification. The library products are ready for sequencing analysis via Illumina HiSeq™ 2000.
GEO Accession
GSM1243356