WGS of M.intracellulare BDQ2C
Whole genome DNA was isolated with the Epicentre MasterPure kit. DNA was sheared by sonication  and size selection was performed using Agencourt AMPure beads. Paired-end libraries were generated with the NEBNext Ultra DNA library prep kit. Sequencing was performed with the MiSeq reagent version 3 kit (600 cycle).