Genomic diversity of pearl millet
Genotyping by sequencing Libraries were constructed with PstI-MspI enzymes to analyze the genomic diversity of pearl millet.First author: Zhenbin Hu and corresponding author Geoff Morris.The key for mapping barcodes to samples: AACCTA,PI164421;GCGCTT,PI179949;ATAAGG,PI180306;TGTCTCCT,PI213531;GTGCTACATT,PI214329;GGCCTCG,PI214330;TTGGAA,PI215602;TGTGTGAT,PI218098;CCTGAGAA,PI218099;CCACAG,PI218100;CGCATG,PI219820;GCCTT,PI250215;GATCAT,PI250394;CGCCG,PI250395;GGCCA,PI263541;AACAGACATT,PI271223;ACGACACA,PI271597;GCGCAGAA,PI271598;GTCATG,PI271599;GCTAT,PI271600;TTCAAGCAT,PI278915;ACGATCCG,PI278951;ATGTG,PI278970;CACACGA,PI278993;CCAGGCAACA,PI279658;TTCACG,PI279660;AACAGCACT,PI279661;TCTCT,PI279662;CTACA,PI279663;CTAACGAAT,PI279664;TCGTCA,PI279666;CAGAGACATT,PI279667;GAGAT,PI279668;CACAACAAGT,PI279669;ACGTT,PI279671;GGATGCCT,PI295124;TGATAAT,PI295125;AAGCG,PI295126;ATAGACCG,PI295127;CGTTGGT,PI295129;TCGCG,PI295130;CGTCA,PI295131;CTTGTAT,PI295132;ACTGG,PI295133;AATCT,PI295134;GTTGGAAG,PI295136;GCTGAA,PI295137;GTTCT,PI295138;ATCCTG,PI295139;GAATT,PI295140;TCGGCG,PI295141;CGGCGGCCT,PI295142;TAGTT,PI295143;TGTAG,PI295144;GTAATACAG,PI295145;GCTCTGCGA,PI295146;CACGAG,PI295147;CAGGTAA,PI295148;GGATCACAGA,PI295149;TCTAACAAGT,PI295150;GTCTTACT,PI295151;TTGAA,PI295152;TGGCT,PI295154;CAGCT,PI295155;TGTTAGCT,PI295156;TTAGAG,PI295157;ATCAA,PI295158;GGACCGCAA,PI295159;TGACCG,PI295160;CTCGTGT,PI295161;TATTAGAA,PI295162;GAGTG,PI295163;TTGCACCAG,PI295164;CTCGG,PI295165;GATTA,PI295166;CCGTTCA,PI295167;GTAGGCA,PI295168;AATGGCA,PI296377;TCAACACT,PI300088;GCACT,PI307694;CACGGCCT,PI307697;TAGGTG,PI307698;GTTAA,PI307703;GGCGACA,PI307704;GGAGG,PI307705;CTTGGCAG,PI307708;GTAGA,PI307709;GCGAG,PI307710;TGTATG,PI307711;ATGTACCG,PI307712;CAGAA,PI307713;CAGGCACAGA,PI307714;ACCTG,PI307715;CCTTA,PI311272;CGGTG,PI311273;TGGACACT,PI526272;CATACGCG,PI526273;TGATCGCT,PI526274;TGTACGCA,PI526275;ATCTGACT,PI526276;TGGTCAAG,PI526277;GCGTGCCAGA,PI526278;CCGCA,PI526279;AAGGCCAACT,PI526280;TGTGAGG,PI526281;TTAGGA,PI526282;CGTAGCAACA,PI526283;TGTCAAT,PI526285;CTATCACT,PI526286;TGCGG,PI526287;TTGGCGCT,PI526288;GTCACGA,PI526289;ACCAAG,PI526290;CCGAT,PI526291;TCGTGACAGT,PI526292;ACTCCACG,PI526293;TGTTGACG,PI526294;CCAAGACAGT,PI526295;AAGCAGA,PI526296;TCCTGCT,PI526297;CTGAACCA,PI526298;ACTAA,PI526299;GTTCACA,PI526300;AACGACCACA,PI526301;CCATCCAA,PI526302;TCCTCCA,PI526303;AATTG,PI526304;GGTTG,PI526305;TACCT,PI526306;CATTGA,PI526307;CAATTGCT,PI526308;TGAGA,Blank;GAATGCAATA,Blank;TATTGCAG,Blank;CAGACCAAGT,Blank;TGACGCCA,PLS01;GGAGTCAAG,PLS14;TTATCCAT,PLS107;AACTT,PLS108;CTGTTG,PLS109;TAAGACA,PLS110;CTGTGT,PLS111;AATCGGAGG,PLS112;GTAACG,PLS113;GGAGAGCAT,PLS114;TACAAG,PLS115;TCCAG,PLS116;CATCTGCCG,PLS15;TGTGGA,PLS117;TAGTCCAT,PLS118;GGATTG,THIALACK2;GAGTCACAAT,PLS119;TCAGTAAT,PLS120;CGCGCCG,PLS121;TGGAGCCT,PLS122;TCCTCACAT,PLS123;CCATG,PLS124;TTCAGCCAGT,PLS125;TTATTACAT,PLS16;AACTGAAG,PLS126;TGGATA,PLS127;CGTGACCT,PLS128;GACGTGA,PLS129;CGGTTGCAT,PLS130;TCACA,PLS131;AATGCAG,PLS137;CTAACA,PLS138;GATGGCCAT,PLS140;TCGTA,PLS147;CAGATA,PLS17;TGAAGCAACT,PLS151;GATTCA,PLS153;ATAGCGT,PLS154;CTTCAGA,PLS155;GACGGCA,PLS157;TGTGACAAGA,PLS158;GTCGT,PLS159;CCGTGA,PLS160;GGCCTG,PLS161;AACGCACATT,PLS18;TGCAA,PLS162;GTATTGACT,PLS163;TGTTACG,PLS164;ACAACGCAT,PLS166;CAAGCCAATT,PLS167;CCATAGA,PLS168;ATCTGCAACA,PLS169;CGTCTG,PLS170;GTCCTGCCA,PLS171;ACGCTAA,PLS172;ATTAT,PLS19;GCCAGACATT,PLS173;TGACGT,PLS174;AACGG,PLS175;GCGCGAG,PLS176;GATTGGAAGA,PLS177;GGCGGACGA,PLS178;CAATCAT,PLS179;GGCACGCAT,PLS180;AAGGA,PLS181;TCTGA,PLS182;CACCA,PLS20;GTTACA,PLS183;ATAGG,PLS184;GTGCG,PLS185;ACTGAG,PLS186;GAGACG,PLS187;GCTCA,PLS188;AATAAGAGT,PLS189;ATCGTACGT,PLS190;ACATCACCG,PLS191;GTGTT,PLS192;GCAAGCCAT,PLS22;TTACT,PLS193;ATCTTA,PLS194;GCGGA,PLS195;CCTGCCA,PLS196;TTACACA,PLS197;GCGCACT,PLS198;CTTATCA,PLS199;ACGATA,PLS200;GAGCAA,PLS201;AATGTA,PLS202;CCACTCA,PLS23;TTGCGCT,PLS203;ATTAACAATT,PLS204;CCTTCG,PLS205;TGTATACAG,PLS206;ATGATACG,PLS207;GGTATGAAT,PLS208;CCGTCACAGT,PLS209;GGTAAGCA,PLS210;CCGTACCACT,PLS211;CAGTAA,PLS212;CAGAGGT,PLS24;CTTCCGCAA,PLS213;GTACGGACG,PLS214;CTCTCCAG,PLS215;GAACTT,PLS216;TCTCCGT,PLS217;GAGGTCCT,PLS219;CATGG,PLS220;CGCCTCAT,PLS221;GTTCGGT,PLS222;ACACG,PLS223;GGCTTA,PLS02;GAAGCA,PLS25;TCCGT,PLS224;TTCTCA,PLS225;CCAGGA,PLS226;TCATT,PLS227;TAATTG,PLS228;ATGCT,PLS230;TGTACA,PLS231;TAGCTAT,PLS232;ACTACAAT,PLS233;CTTATG,PLS234;TAGATGA,PLS26;GCCGCAAT,PLS235;CGCAAGA,PLS301;TATAAGCAG,ISMI9507;CTGCCGT,PLS302;GGATGA,PLS303;GAATAGA,PLS304;ATCTCGT,PLS305;ATTCCAA,PLS306;AAGCAACT,PLS307;CAGCGCAAGA,PLS308;TGAAT,PLS27;GACTAACT,PLS309;TAGAG,PLS310;CATAAG,PLS311;ACACAACA,PLS312;ATTCA,PLS313;TTCCA,PLS314;ACAGAAT,PLS315;TTCTG,PLS316;GACAACT,PLS317;GACACACT,PLS318;GGACAG,PLS28;ACCGA,PLS319;GCTCGCCAT,PLS320;ATGGTGA,PLS321;GGCAT,PLS322;TTGAGACAG,PLS323;ATATT,PLS324;ACATGCCAG,PLS325;GAGCGCT,PLS326;ATACTGAG,PLS327;ACCTAA,PLS328;GCCAACAAGA,PLS29;CTCGCAA,PLS329;CGCGT,PLS330;GTAAG,PLS331;TGTACCAG,SOUNA3;CCGACG,ISMI 9301ACCGTCCAT,THIALACK(LOCAL);GTCTCAACG,PEO 2830;TGCCTA,ICMV-89305;GAAGTG,PLS30;TAATTAA,ICMVIS99001;CTCCAA,SOSATC-88;GCGTAG,IBMV8402;CGCTCACACA,ICMV-IS92222;GTGACACAT,PEO8030;GAGCGACAT,PLS31;GCGCTCA,PLS32;AATTAG,PLS33;CGCACCAATT,PLS34;CTAAGCA,PLS03;TCACGGAAG,PLS35;GCGTACAAT,PLS36;AACGTGCCT,PLS37;TGGCCAG,PLS38;CATAT,PLS39;ATCTGT,PLS40;TGCCGCAT,PLS41;TAGCGGAT,PLS42;CTTGCCATT,PLS43;ACTGCGAT,PLS44;GCCTACCT,PLS05;GGAACGA,PLS45;CTCGCGG,PLS46;TATCA,PLS47;ACGCGCG,PLS48;CCTCG,PLS49;GCACGAT,PLS50;AAGACGCT,PLS53;CGTGTCA,PLS54;TATTCGCAT,PLS55;TGCTT,PLS06;GGTATA,PLS56;TTCGTT,PLS57;ACAACT,PLS59;AACTGG,PLS61;TAGCCAA,PLS62;GTCGCCT,PLS63;CTCAT,GAWANE;TTGCTG,PLS64;TATGT,PLS65;ACCAGGA,PLS10;CAACCACACA,PLS66;ATAGAT,PLS67;TCTTGG,PLS68;ATATAA,PLS69;ACTGCT,PLS70;ATGAGCAA,PLS71;ATATCGCCA,PLS72;AATAACCAA,PLS73;ACGGTACT,PLS74;CGCAACCAGT,PLS75;CTCTCGCAT,PLS11;CAGTGCCATT,PLS76;TAGCAG,PLS77;GCTCCGA,PLS78;CCGAACA,PLS79;GGTGT,PLS80;TGGCAACAGA,PLS81;CGTGGACAGT,PLS82;CTTGA,PLS83;CTCTA,PLS84;AATGAACGA,PLS85;ATGGCAA,PLS12;GCGCCG,PLS86;TCACTG,PLS87;ACAACCAACT,PLS88;ATCCG,PLS89;TCAGAGAT,PLS90;GGAAGACAT,PLS91;GGATA,PLS92;CTCGTCG,PLS93;TGGCACAGA,PLS94;GCGTCCT,PLS95;TCCGAG,PLS13;GGTGCACATT,PLS96;CGTCGCCACT,PLS97;CAAGT,PLS98;ACAGT,PLS99;TGCAGA,PLS100;CTTAG,PLS101;CGTTCA,PLS103;CATCACAAG,PLS104;CGCAGACACT,PLS105;CAATA,PLS106;AACCTA,PI331348;GCGCTT,PI331350;ATAAGG,PI331353;TGTCTCCT,PI331664;GTGCTACATT,PI331681;GGCCTCG,PI331692;CGCATG,PI337492;GCCTT,PI338000;ATCAT,PI358400;CGCCG,PI402582;GGCCA,PI402583;AACAGACATT,PI452268;ACGACACA,PI452269;GCGCAGAA,PI452270;GTCATG,PI508273;GCTAT,PI508274;TTCAAGCAT,PI511025;ACGATCCG,PI511027;ATGTG,PI511029;CACACGA,PI511030;CCAGGCAACA,PI511031;TTCACG,PI511032;AACAGCACT,PI511033;TCTCT,PI511035;CTACA,PI511036;CTAACGAAT,PI511038;TCGTCA,PI511039;CAGAGACATT,PI511040;GAGAT,PI511041;CACAACAAGT,PI511042;ACGTT,PI511043;TGTAG,PI511043;GGATGCCT,PI511044;TGATAAT,PI511045;AAGCG,PI511046;ATAGACCG,PI511047;CGTTGGT,PI511048;TCGCG,PI511049;CGTCA,PI511051;CTTGTAT,PI511052;ACTGG,PI511386;AATCT,PI517024;GTTGGAAG,PI521611;GCTGAA,PI521612;GTTCT,PI521613;ATCCTG,PI521614;GACACACT,PI521615;GAATT,PI521615;TCGGCG,PI521616;CGGCGGCCT,PI521617;TAGTT,PI521618;GTAATACAG,PI521620;GCTCTGCGA,PI521621;CAGACCAAGT,PI521622;CAGGTAA,PI521623;GGATCACAGA,PI521624;TCTAACAAGT,PI521625;GTCTTACT,PI521626;TTGAA,PI521627;TGGCT,PI521628;CAGCT,PI521629;TGTTAGCT,PI521630;TTAGAG,PI521631;ATCAA,PI521632;GGACCGCAA,PI521633;TGACCG,PI521634;CTCGTGT,PI521635;TATTAGAA,PI521636;GAGTG,PI521637;TTGCACCAG,PI521638;CACGAG,PI521639;GATTA,PI521640;CCGTTCA,PI521641;GTAGGCA,PI521642;AATGGCA,PI521643;TCAACACT,PI521644;GCACT,PI521645;CACGGCCT,PI521646;TAGGTG,PI521647;GTTAA,PI521648;GGCGACA,PI521649;GGAGG,PI521650;CTTGGCAG,PI521651;GTAGA,PI521652;GCGAG,PI521653;TGTATG,PI521654;ATGTACCG,PI521655;CAGAA,PI521736;CAGGCACAGA,PI526268;ACCTG,PI526269;CCTTA,PI526270;CGGTG,PI526271;TGGACACT,PI526309;CATACGCG,PI526310;TGATCGCT,PI526311;TGTACGCA,PI526312;ATCTGACT,PI526313;TGGTCAAG,PI526314;GCGTGCCAGA,PI526315;CCGCA,PI526316;AAGGCCAACT,PI526318;TGTGAGG,PI526319;TTAGGA,PI526320;CGTAGCAACA,PI526321;TGTCAAT,PI526322;CTATCACT,PI526324;TGCGG,PI526325;TTGGCGCT,PI526326;GTCACGA,PI526327;ACCAAG,PI526328;CCGAT,PI526329;TCGTGACAGT,PI526330;ACTCCACG,PI526331;TGTTGACG,PI526332;CCAAGACAGT,PI526333;AAGCAGA,PI526334;TCCTGCT,PI526335;CTGAACCA,PI526336;ACTAA,PI526337;GTTCACA,PI526339;AACGACCACA,PI526340;CCATCCAA,PI526341;TCCTCCA,PI526342;AATTG,PI526343;GGTTG,PI526344;TACCT,PI526345;CATTGA,PI526387;CAATTGCT,PI595755;TTGGAA,PI597490;TGTGTGAT,PI634545;CCTGAGAA,PI634547;CCACAG,PI634548;GAATGCAATA,Blank;TATTGCAG,Blank;CTCGG,Blank;TGACGCCA,PLS01;GGAGTCAAG,PLS14;CATCTGCCG,PLS15;TTATTACAT,PLS16;CAGATA,PLS17;AACGCACATT,PLS18;ATTAT,PLS19;CACCA,PLS20;GCAAGCCAT,PLS22;CCACTCA,PLS23;CAGAGGT,PLS24;CTCTCCAG,PLS215;GAACTT,PLS216;TCTCCGT,PLS217;GAGGTCCT,PLS219;CATGG,PLS220;CGCCTCAT,PLS221;GTTCGGT,PLS222;ACACG,PLS223;GGCTTA,PLS02;GAAGCA,PLS25;TCCGT,PLS224;TTCTCA,PLS225;CCAGGA,PLS226;TCATT,PLS227;TAATTG,PLS228;ATGCT,PLS230;TGTACA,PLS231;TAGCTAT,PLS232;ACTACAAT,PLS233;CTTATG,PLS234;TAGATGA,PLS26;GCCGCAAT,PLS235;CGCAAGA,PLS301;TATAAGCAG,ISMI9507;CTGCCGT,PLS302;GGATGA,PLS303;GAATAGA,PLS304;ATCTCGT,PLS305;ATTCCAA,PLS306;AAGCAACT,PLS307;CAGCGCAAGA,PLS308;TGAAT,PLS27;GACTAACT,PLS309;TAGAG,PLS310;CATAAG,PLS311;ACACAACA,PLS312;ATTCA,PLS313;TTCCA,PLS314;ACAGAAT,PLS315;TTCTG,PLS316;GACAACT,PLS318;GGACAG,PLS28;ACCGA,PLS319;GCTCGCCAT,PLS320;ATGGTGA,PLS321;GGCAT,PLS322;TTGAGACAG,PLS323;ATATT,PLS324;ACATGCCAG,PLS325;GAGCGCT,PLS326;ATACTGAG,PLS327;ACCTAA,PLS328;GCCAACAAGA,PLS29;CTCGCAA,PLS329;CGCGT,PLS330;GTAAG,PLS331;TGTACCAG,SOUNA3;CCGACG,ISMI9301;ACCGTCCAT,THIALACK(LOCAL);GTCTCAACG,PEO2830;TGCCTA,ICMV-89305;GAAGTG,PLS30;TAATTAA,ICMVIS99001;CTCCAA,SOSATC-88; GCGTAG,IBMV8402;GTGACACAT,PEO8030;GAGCGACAT,PLS31;GCGCTCA,PLS32;AATTAG,PLS33;CGCACCAATT,PLS34;CTAAGCA,PLS03;TCACGGAAG,PLS35;GCGTACAAT,PLS36;AACGTGCCT,PLS37;TGGCCAG,PLS38;CATAT,PLS39;ATCTGT,PLS40;TGCCGCAT,PLS41;TAGCGGAT,PLS42;CCTTGCCATT,PLS43;ACTGCGAT,PLS44;GCCTACCT,PLS05;GGAACGA,PLS45;CTCGCGG,PLS46;TATCA,PLS47;ACGCGCG,PLS48;CCTCG,PLS49;GCACGAT,PLS50;AAGACGCT,PLS53;CGTGTCA,PLS54;TATTCGCAT,PLS55;TGCTT,PLS06;GGTATA,PLS56;TTCGTT,PLS57;ACAACT,PLS59;AACTGG,PLS61;TAGCCAA,PLS62;GTCGCCT,PLS63;CTCAT,GAWANE;TTGCTG,PLS64;TATGT,PLS65;ACCAGGA,PLS10;CAACCACACA,PLS66;ATAGAT,PLS67;TCTTGG,PLS68;ATATAA,PLS69;ACTGCT,PLS70;ATGAGCAA,PLS71;ATATCGCCA,PLS72;AATAACCAA,PLS73;ACGGTACT,PLS74;CGCAACCAGT,PLS75;CTCTCGCAT,PLS11;CAGTGCCATT,PLS76;TAGCAG,PLS77;GCTCCGA,PLS78;CCGAACA,PLS79;GGTGT,PLS80;TGGCAACAGA,PLS81;CGTGGACAGT,PLS82;CTTGA,PLS83;CTCTA,PLS84;AATGAACGA,PLS85;ATGGCAA,PLS12;GCGCCG,PLS86;TCACTG,PLS87;ACAACCAACT,PLS88;ATCCG,PLS89;TCAGAGAT,PLS90;GGAAGACAT,PLS91;GGATA,PLS92;CTCGTCG,PLS93;TGGCACAGA,PLS94;GCGTCCT,PLS95;TCCGAG,PLS13;GGTGCACATT,PLS96;CGTCGCCACT,PLS97;CAAGT,PLS98;ACAGT,PLS99;TGCAGA,PLS100;CTTAG,PLS101;CGTTCA,PLS103.