Bacillus amyloliquesfaciens C-1 genome sequence
The genomic DNA of strain C-1 was isolated and purified by kit (Applied Biosystems ? 4413021), and sequenced on the Pacific Bioscience (PacBio) RS II and Illumina Hiseq 2000 systems at Genefund, Shanghai, China. The genome was assembled with SMRT analysis v2.3.0 and RS_HGAP_Assembly.3, and the genome assembly was improved by using the software Pilon. Identification of protein-coding open reading frames (ORFs) and annotation of ORFs were performed by NCBI using the NCBI Prokaryotic Genome Annotation Pipeline. Genes were functionally annotated by BLAST search in COG, KEGG, Nr, and Pfam Databases. Putative insertion sequence (IS) elements were identified by BLASTn search against the IS finder Database.