Next gen sequencing of bisulfite converted gDNA: mouse mammary gland: Sample early NP5       mouse 
"Early NP5 – not included in any analysis due to low mapping efficiency-Female mice were bred and underwent a full pregnancy or left as         nulliparous contorls. Mice were then euthanized at two time points, immediately following         mammary involution or 6 months later. gDNA was harvested from frozen mammary glands and         hybrindized to Agilent SureSelectXT Mouse methyl-Seq probes to enrich for genomic regions         regulated by DNA methylation. The enriched library was bisulfite converted and assessed by         next generation sequencing. "
alignment_software
Bismark