ABI SOLiD BY/RM genomic DNA
We prepared samples as per manufacturers' instructions, using the SOLiD Fragment Library Construction Kit (Applied Biosystems #4443473) or SOLiD Total RNA-Seq Kit (Applied Biosystems #4452437A) as appropriate (see Design description associated with this experiment). All SOLiD  samples were tagged with four barcodes per library using the SOLiD Fragment Library Barcoding Kit (Applied Biosystems #4443045B; see overall Study description for the specific barcodes used).