GSM4123963: 16149X11 138-V; Mus musculus; RNA-Seq
10-15 mg of tissue was placed in Tri reagent LS (Molecular Research Center, Cincinnati, OH, USA) and disrupted via hand-held homogenizer (Bio-Gen PRO200; Pro Scientific, Oxford, CT, USA).  Chloroform was added to separate the RNA into an aqueous phase that was then precipitated using isopropanol.   Extracted RNA was then washed with ethanol and suspended in nuclease-free water with EDTA.  RNA was purified using TURBO DNase (AM2238) with Zymo RNA Clean and Concentrator-5 clean up.  RNA integrity and quantity was determined using the EPOCH (Take3; BioTek) spectrophotometer. Total RNA samples (100-500 ng) were hybridized with Ribo-Zero Gold to substantially deplete cytoplasmic and mitochondrial rRNA from the samples.  Stranded RNA sequencing libraries were prepared as described using the Illumina TruSeq Stranded Total RNA Library Prep Gold kit (20020598) with TruSeq RNA UD Indexes (20022371).  Purified libraries were qualified on an Agilent Technologies 2200 TapeStation using a D1000 ScreenTape assay (cat# 5067-5582 and 5067-5583), and average RIN was 8.3.  The molarity of adapter-modified molecules was defined by quantitative PCR using the Kapa Biosystems Kapa Library Quant Kit (cat#KK4824).  Individual libraries were normalized to 1.30 nM in preparation for Illumina sequence analysis.  Sequencing libraries (1.3 nM) were chemically denatured and applied to an Illumina NovaSeq flow cell using the NovaSeq XP chemistry workflow (20021664).
GEO
GSM4123963
GEO Accession
GSM4123963