GSM1701086: WT2; Citrus sinensis; RNA-Seq
Approximate 2 to 3 g of  powdered material was subjected to each RNA extraction, including 10 mL buffer  extraction, 5 mL chloroform-isoamylalcohol extraction (twice), 5 mL isopropanol  precipitation, 5 mL 75% ethanol cleaning and RNA purification as described  by Camacho-Villasana YM et al. mRNA of eukaryotes is enriched by using the oligo(dT) magnetic beads. Adding the fragmentation buffer, the mRNA is interrupted to short fragments (about 200 bp), then the first strand cDNA is synthesized by random hexamer-primer using the mRNA fragments as templates. Buffer, dNTPs, RNase H and DNA polymerase I are added to sythsize the second strand. The double strand cDNA is purified with QiaQuick PCR extraction kit and washed with EB buffer for end repair and single nucleotide A (adenine) addition. Finally, sequencing adaptors are ligated to the fragments. The required fragments is purified by agrose gel electrophoresis and enriched by PCR amplification
GEO
GSM1701086
GEO Accession
GSM1701086