atml1-3 rep. 3
RNA-seq library preparation was performed as in Kumar et al. (2012; PubMed ID 22973283) with modifications for individual sample preparation. Reads were filtered for low-quality residues and adaptor contaminants via Trimmomatic 0.33, sorted by barcodes via  fastx_barcode_splitter.pl (in FastX-Toolkit 0.0.14), and trimmed of 5'-end 4-nt barcodes via fastx_trimmer (in FASTX Toolkit 0.0.14).