LS01_ALL_presentation_WGS
Presentation, remission and relapse DNA samples from case LS01 were sequenced by Illumina UK and analysed using the remission sample as the matching normal.  Sequencing reads were aligned to human GRCh37.1 reference genome using ISAAC. Identification of somatic SNVs and small somatic indels (<50 bp) was performed by Strelka. Large structural variants (including deletions, inversions, duplications and insertions all >50bp and translocations) were called by Manta.