Reads of MSSA isolates
DNA libraries were prepared using the Nextera XT kit and were sequenced         using version 2 chemistry to generate 300-bp pair-ended reads. Paired sequence reads were         analysed with in-house software that performed read quality analysis and adapter removal. We         assembled the adapter-free filtered reads de novo using SPAdes in the ?careful? mode, with         other parameters set as default. We used Prokka to annotate the assembled genomes with         default parameters.