GSM3244856: d7_HiC_rep2; Mus musculus; Hi-C
We used the in situ Hi-C method of (Rao et al. Cell 2014) to prepare all libraries, using 5-10 million cells. Importantly, we sequenced 20-40 million reads per library. This is a lower sequencing depth than many published Hi-Cs, however since the megadomains are large and prominent feature of the organization of the Xi, this depth is appropriate for detecting the megadomains efficiently and economically.
GEO Accession
GSM3244856