Whole genome sequencing data of Escherichia coli isolated from mouse lung sampled from SPF housed female laboratory mice (C57BL/6J,  Jackson laboratories)
Isolation of bacteria from lung, bacterial genomic DNA isolation, quantification, library formation, single-end reads of 50 bases and barcodes strategy using Nextera XT kit (Illumina, USA) on HiSeq 4000 single-read Illumina flow cell