"Genotyping-by-sequencing data from sorghum BREAD project, Flowcell_Lane = 70MUKAAXX_1"
This sample is a multiplexed barcoded genotyping-by-sequencing library with pooled samples. It was prepared using the method of Elshire et al. (DOI:10.1371/journal.pone.0019379) with ApeKI restriction enzyme, as described in Morris et al. (DOI:10.1073/pnas.1215985110). The key for mapping barcodes to samples (n = 96) is: CTATTA,2B_RMFR; CGGTAGA,B35; TCTGTGA,Blank; TTCCTGGA,Blank; CGTGTGGT,BTx623; CGAT,E36-1; ATGAAAC,ICSV575_RMFRS; CCAGCT,ICSV745; CTACGGA,IRAT204; TTCAGA,IS1127; GAATTCA,IS2179; TGGTACGT,IS2221; GGAAC,IS2367; GGAAGA,IS2416; GCGGAAT,IS2430; GGATTGGT,IS2678; CTCC,IS26833; TTCTC,IS27146; GCTTA,IS27164; TCACC,IS2730; AACGCCT,IS27390; AGGC,IS27490; TAGGAA,IS2834; GAACTTC,IS2873; TCTCAGTC,IS2902; TCGTT,IS29233; TGGCTA,IS29310; TGCTGGA,IS29375; TGCA,IS29407; AGCCC,IS29409; CTTCCA,IS29496; AATATGC,IS29569; GATC,IS29606; ACCTAA,IS29691; ACGTGTT,IS29872; AACCGAGA,IS29876; ACTA,IS29911; GTATT,IS30175; GAGATA,IS30405; ACGACTAC,IS30417; TCAC,IS30436; ATATGT,IS30441; ATTAATT,IS30443; ACAGGGAA,IS30451; GTCAA,IS3121; GTACTT,IS3147; CAGA,IS31559; CTGTA,IS31681; ATGCCT,IS32569; GGTGT,IS33261; AGGAT,IS33353; TAGCGGA,IS3443; GCTGTGGA,IS35; GTGAGGGT,IS3507; CTAGC,IS3583; GCTCTA,IS3672; GGACCTA,IS3675; CCGGATAT,IS3685; TAATA,IS3885; GTTGAA,IS4035; TCGAAGA,IS4112; TATCGGGA,IS4726; ACAAA,IS4776; CCACAA,IS5106; GTCGATT,IS5622; CGCCTTAT,IS5720; TACAT,IS5910; CGCTT,IS602; TAACGA,IS6154; AAAAGTT,IS9830; TAGGCCAT,M148_SPV422; CCTAC,M35-1_SPV422; TGCAAGGA,PB15520; GAGGA,QL10; GCCAGT,S35; GTAA,SSM1046; CTTGCTT,SSM1049; AGTGGA,SSM1057; CATCT,SSM1102; CGCGGT,SSM1123; ATCGTA,SSM12; CGCTGAT,SSM1267; CGCGGAGA,SSM1284; TGCGA,SSM1370; GGTTGT,SSM1592; ATTGGAT,SSM19; AACT,SSM205; ACCGT,SSM215; TATTTTT,SSM249; TAGCATGC,SSM275; ATTGA,SSM276; ACGTGGTA,SSM29; CATCGT,SSM379; CATAAGT,SSM501; CCATGGGT,SSM505; GCGT,SSM547
Flowcell_Lane = 70MUKAAXX_1