"Genotyping-by-sequencing data from sorghum BREAD project, Flowcell_Lane = D0D0HACXX_5"
This sample is a multiplexed barcoded genotyping-by-sequencing library with pooled samples. It was prepared using the method of Elshire et al. (DOI:10.1371/journal.pone.0019379) with ApeKI restriction enzyme, as described in Morris et al. (DOI:10.1073/pnas.1215985110). The key for mapping barcodes to samples (n = 384) is: CATCGC,Blank; AGGC,BTx623; GCATCC,IS1054; TACGGTA,IS11167; GTCC,IS11758; CGCAT,IS11758; AGCATT,IS121; AATCGTT,IS1212; GATT,IS1212; CGTCA,IS1215; CGATC,IS1216; ACGTC,IS121-NEB; TCCAGT,IS18415; CCACGT,IS18417; CGCCAT,IS18421; CAGCCT,IS18421; TATCTGA,IS18424; ACTATGT,IS18425; TAGTGC,IS185; ACAT,IS18540; GCACT,IS18542; GCTTGA,IS20213; GATGTC,IS20288; ATCGTC,IS20302; GCCATC,IS20387; TTCAAGT,IS20408; CGTGAAT,IS20408; GCGA,IS22040; AGCTA,IS22043; TCCGTA,IS22045; TGTTAC,IS22068; GTCACT,IS22068; CGCTCA,IS22189; GAGCAGT,IS22233; TTGCAGA,IS22233; TGCT,IS22236; CAGCT,IS22240; TCGGAT,IS22243; CAGTTA,IS22266; ACGCTC,IS22361; TCTAGGA,IS22364; AACTTGT,IS22365; CCTC,IS22365; TCAGC,IS22366; GTCTTA,IS22369; GCCTAT,IS23144; AGGTCT,IS23145; CTGATC,IS23146; ACACGGT,IS23166; TGACGTA,IS23166; AACA,IS23167; CATGC,IS23490; CGGAGT,IS23495; AGTGGC,IS23502; CCTGCA,IS23508; CCAGTC,IS23508; GACGTGA,IS23520; GCTATAA,IS24704; CTGT,IS24704; GCTAC,IS24706; CGTCTA,IS24721; TGACCT,IS24733; GTACTC,IS24737; TACGCC,IS24811; TCATAGT,IS24829; ATCGTAT,IS24844; TAAC,IS24853; CTGAC,IS24853; CACGTT,IS24873; TTGCAC,IS25532; ACCTGC,IS25546; CCGTAC,IS25547; TTACGAT,IS25557; TACTGAT,IS25557; CTCGA,IS25559; GACTC,IS26695; GTTAGC,IS26696; CTAGCT,IS26700; CTTGAC,IS26716; TCGACC,IS26717; GGCTAGA,IS26717; CTTGAGA,IS27223; CTCCGA,IS3025; GTTCCA,IS3384; GCTCAC,IS3385; ACCGCT,IS358; CGTACC,IS4509; CTATGGA,IS4516; CGAA,IS4516; TCGCA,IS5359; ATGCGT,IS5360; TTGGCA,IS5374; TGAATC,IS5374; CTATGC,IS5379; ATTCAGT,IS5395; ACCGT,IS77; TAATTGC,104B; TGCATAT,22436B; AATTGGC,22454B; GGTGGCA,22458B; AGGAGTC,22528B; TGTAAGC,22548B; CGACAGT,4111B; CATGTTA,Barsizoot; GCAACGT,Blank; AAGTCTT,CSM63E; TAAGCTT,India-Bor; GACTATT,India-chatrakuta; GAATCTA,India-Jaliapad; TAGCGGC,India-Kajaldvngrj; AGGTTAC,India-Kompur; ACTTGAT,IS11960; CCAGGTA,IS13264; AGAGCCT,IS19126; AAGGTTC,IS19262; ATTCGAC,IS20624; ATCAGTT,IS21888; TCAGTAT,IS23033; GTACTTA,IS24006; TCTGATA,IS24134; GCCAGAT,IS2421; TGGCAAC,IS24775; TACGAGC,IS25848; CTAGCAT,IS26198; CAAGATC,IS26224; CAGTTGA,IS26735; TCAAGTT,IS27224; ACGTGTA,IS27246; CAGCGTA,IS27250; CTGAATT,IS27250; GTAGAGC,IS27251; CAATGTT,IS27287; ATGTCAA,IS27786; ATAGTCA,IS28688; ATGATCT,IS29798; TTGACTA,IS29977; AGCTGCA,IS30001; TCGCGCA,IS30205; TGTGCAA,IS30335; GTTACGA,IS30397; CACAGGT,IS30409; TAGCCAT,IS30492; ACGGCAT,IS32520; ATACTGC,IS32520; GCTGGAC,IS32534; GATCATA,IS32554; GATGCAT,IS32588; AGTTCGA,IS32590; TCGTTAA,IS33089; GACCTAT,IS33090; TTCTTGA,IS33091; GCGGCTA,IS33092; GTCATCA,IS33094; GCATTGA,IS33094; CTAATGT,IS33155; GCTAATT,IS33188; TGATCAT,IS33225; CATTAGT,IS33225; GGACCTT,IS33255; CGTTATA,IS33291; CAGTGAC,IS34767; CAGGTAT,IS34771; GTCGATA,IS34786; ACGCTGA,IS34787; CGTCGGA,IS34787; ATTAGCA,IS34788; GTGTACA,IS34949; TTAGACT,IS34967; GCACACT,IS34968; TGCAATA,IS34969; TATACGT,IS34969; GATAGCT,IS6094; TCACCGA,IS6723; CTGGAAC,IS6928; GTCTGAA,IS7463; ATCCGGA,IS7620; ACCGAGT,IS7958; TGTCATT,Koyer-36; AGCGTTA,Krosnodar; CGCCGAT,M35-1; AGTACTT,M35-1-19; ATATCGT,MG114; GCGTAAT,MG175; CGCTTAA,Nagar-7; AGTGTGC,Phulechitra; CTTAGAT,RS610; TAGGTCA,RS610; GAATTCT,SPV1411; GGCAACT,Sugar20-1; TGTATCA,Sugar20-2; AGTCTAT,Sugar45; TGATACA,Zervogrado; AAGACAGT,100110PRABT; CGGCTCA,100210PRABT; CATATGC,100310PRABT; CGCCGCAT,1004/10PREVRT; ATTGATC,100410PRABT; GCGAGGTT,1005/10PREVRT; GCGCGTGA,100510PRABT; GCTAGTGT,100610PRABT; GTGCCAC,1032/10PRHB; CGATGTGT,1033/10PRHB; CATTGAGA,1051/10PRHB; GAACATGA,1055/10PRHB; ATGCACC,1061/10PRHB; TTGGCGGA,1081/10PRHB; TCATGAC,1083/10PRHB; TGTCAAGA,1108/10PRHB; ATGACGC,5059-4; TTCGGAC,5080-5; ACCGGTC,5085-5; TATGTAC,5278-6; CAAGAAGT,5304-3; AACGTAGA,5327-3; AGCTTGGT,5332-2; ACGTGTGT,5337-3; TATTGCA,5370-2; GCTTAGC,5435-6; CGGTAGC,5435-8; GTCATGGT,5468-3; CTCACGGA,5468-3; ACAGATGA,5469-2; CAAGTGAA,5482-3; GGATATC,5493-8; ACTGCCA,5495-3; GCAGTTC,5538-2; GGCCGAGT,5551-6; AACAGTGA,5552-4; TAGCGTGT,5570-4; CAGTTGGT,5651-3; GTTAACGA,5655-3; CCGAGCT,5745-3; TAGTACT,5760-2; TATAGTC,5825-3; TGCAAGAA,AVRT1045-1; TCGTGGAT,AVRT1057-3; TTGATAC,AVRT2016-3; AGACAAGT,Blank; TGGACCT,Ch10-7012; GAGTCGC,Ch11; CGGCAGGT,Ch12; CTAGTGGT,Ch13; AATACGGA,Ch14; GATCAGAA,Ch15; ATCTAGC,Ch1-7001; ATATGTC,Ch2-7003; TGAGCGC,Ch3; CACAGAGT,Ch4; AGGCTAGA,Ch5-7006; TTCGAAGA,Ch6; CTGAGTGT,Ch7; TGAATTC,Ch8-7010; GGCGTGTA,Ch9; GGTACAC,ICSB27; TTGTGCGA,ICSR93034; TTCGCCA,ICSV25307; TCCACGC,ICSV25308; ACAATGGA,ICSV25311; GCTGCGGA,ICSV25315; GCGGATGT,ICSV25316; GAACGAAT,ICSV25318; GAAGACAT,ICSV700; TCGCAAGT,ICSV91005; AATGTCT,ICSV93046; GACACTC,IS18521; GTAACAGA,IS18542; ACTCCGC,IS23526; TAACGAGA,NTJ2; TGCATAGA,PMS71; TGACTGGT,PMS90; CAATAGGA,RSSV106; CGTATGGT,RSSV138; ACTCGAGA,RSSV167; AACAAGGT,SP081021-1; GTGCAAGA,SP081021-3; ACGTAAGA,SP081026-2; AGCGATAA,SP4484-2; CACGACT,SP4487-3; CGAGTAC,SP4495; GTATTAC,SP4511-2; ATACAGGA,SP4511-3; GGAGCTGT,SPSSV30; AGTTACT,SPV1411; TGCAGTGT,SPV422; GTTATTC,SPV422; GTACGTGT,SS2016; ACAAGAGT,SSV74; CCACCAGT,SSV84; ACAGGATA,Blank; TCCGATAT,IS1004; CAGGAATA,IS10302; CGCAACTT,IS1041; GGTACTAT,IS10757; CACGCCAT,IS10867; AATGACGA,IS10969; GTCAATAT,IS11026; TTGACAAT,IS11473; CATAATGA,IS11619; CATGGTGT,IS11919; CCGCCTAA,IS1212; ATCGGTGT,IS1219; GTCTGGAT,IS12302; CCGACCAT,IS1233; TCGAGATA,IS12447; AGAACGAT,IS12697; CGGCCGTA,IS12706; TACGTTAA,IS12735; GTGTCAGT,IS12804; TGGCTATT,IS12883; CACCACGT,IS12937; GATCTGGT,IS12945; AGAACTGA,IS12965; GTGCGATT,IS13294; TTAGTCGA,IS13549; AGATACGA,IS13782; AGTGGCTT,IS13893; ACCACCGT,IS13919; TCATTGTA,IS13971; CTGAAGAA,IS14010; GTTCTAAT,IS14090; CTAATTGA,IS14290; GACTCAAT,IS14779; GCTGGATT,IS14861; CCACTGCA,IS15170; CTATGTAA,IS15466; GGTTCATT,IS15478; TCCGCCAA,IS15744; CCTTAGAA,IS15931; TAGCAGTA,IS15945; ACTAGGAA,IS16151; GACACCTT,IS16382; TACAGGAT,IS16528; CGAAGAAT,IS2379; CGGTGATT,IS2382; CGCGCCTA,IS2389; GCCTCCGA,IS2397; TCGGTTGA,IS2413; TTCTTGGA,IS2426; CCTACCGA,IS2864; TGTCTTAA,IS2872; TCTGATTA,IS2902; TATGCTGA,IS3121; TTGCATAT,IS3158; AGTCGTGT,IS3971; AATTCTGT,IS4060; CAACGCTT,IS4092; GGACAATA,IS4360; GTATACTA,IS4372; ATCTCTGA,IS4515; GAACAGTT,IS4581; GCTATAGA,IS4613; CATGTATT,IS4631; CTAGAGTA,IS4698; CGCTTGAA,IS473; AGCAGATA,IS4951; AACGGAAT,IS5094; TGTGCAGT,IS5295; AAGCAGAT,IS5301; ACGATTAA,IS5386; ACAGCCTT,IS5667; TGAAGCAA,IS5919; AACGAGTA,IS602; AAGATCGA,IS603; ATATTCGT,IS608; GCGCGCAT,IS6351; TCTTAGGT,IS6354; TCGATGGT,IS6421; ATGCTGGT,IS7131; TGCGGATT,IS7250; GGTTACGT,IS7305; CTGTGGTA,IS7310; GCATTGGT,IS7679; CGATTAGA,IS7957; GTGGCTAT,IS7987; GTTCATTA,IS8012; GCAAGTAA,IS8348; CTCCTCGA,IS8774; TTACGGTA,IS8777; TGCTTAAT,IS8916; AAGCGATA,IS9108; ATTCAGTT,IS9113; AGACTGAA,IS9177; GAATCGAA,IS9745; GACTGTGT,IS995
Flowcell_Lane = D0D0HACXX_5