"Genotyping-by-sequencing data from sorghum BREAD project, Flowcell_Lane = D0TGUACXX_1"
This sample is a multiplexed barcoded genotyping-by-sequencing library with pooled samples. It was prepared using the method of Elshire et al. (DOI:10.1371/journal.pone.0019379) with ApeKI restriction enzyme, as described in Morris et al. (DOI:10.1073/pnas.1215985110). The key for mapping barcodes to samples (n = 384) is: GGCTAGA,296B_pl3; CACGTT,Blank; AGGC,BNI_ICSL18208; ACCGT,BNI_ICSL18209; ACGTC,BNI_ICSL18210; AGCATT,BNI_ICSL18211; TAGTGC,BNI_ICSL18213; ACCGCT,BNI_ICSL18214; GCATCC,BNI_ICSL18215; AATCGTT,BNI_ICSL18216; GATT,BNI_ICSL18217; CGTCA,BNI_ICSL18218; CGATC,BNI_ICSL18219; CTCCGA,BNI_ICSL18220; GTTCCA,BNI_ICSL18221; GCTCAC,BNI_ICSL18222; CGTACC,BNI_ICSL18223; CTATGGA,BNI_ICSL18224; CGAA,BNI_ICSL18225; TCGCA,BNI_ICSL18226; ATGCGT,BNI_ICSL18227; TTGGCA,BNI_ICSL18228; TGAATC,BNI_ICSL18229; CTATGC,BNI_ICSL18230; ATTCAGT,BNI_ICSL18231; TACGGTA,BNI_ICSL18232; GTCC,BNI_ICSL18233; CGCAT,BNI_ICSL18234; TCCAGT,BNI_ICSL18235; CCACGT,BNI_ICSL18236; CGCCAT,BNI_ICSL18237; CAGCCT,BNI_ICSL18238; TATCTGA,BNI_ICSL18239; ACTATGT,BNI_ICSL18240; ACAT,BNI_ICSL18241; GCACT,BNI_ICSL18242; GCTTGA,BNI_ICSL18243; GATGTC,BNI_ICSL18244; ATCGTC,BNI_ICSL18245; GCCATC,BNI_ICSL18246; TTCAAGT,BNI_ICSL18247; CGTGAAT,BNI_ICSL18248; GCGA,BNI_ICSL18249; AGCTA,BNI_ICSL18250; TCCGTA,BNI_ICSL18251; TGTTAC,BNI_ICSL18252; GTCACT,BNI_ICSL18253; CGCTCA,BNI_ICSL18254; GAGCAGT,BNI_ICSL18255; TTGCAGA,BNI_ICSL18256; TGCT,BNI_ICSL18257; CAGCT,BNI_ICSL18258; TCGGAT,BNI_ICSL18259; CAGTTA,BNI_ICSL18260; CATCGC,BNI_ICSL18261; ACGCTC,BNI_ICSL18262; TCTAGGA,BNI_ICSL18263; AACTTGT,BNI_ICSL18264; CCTC,BNI_ICSL18265; TCAGC,BNI_ICSL18266; GTCTTA,BNI_ICSL18267; GCCTAT,BNI_ICSL18268; AGGTCT,BNI_ICSL18269; CTGATC,BNI_ICSL18270; ACACGGT,BNI_ICSL18271; TGACGTA,BNI_ICSL18272; AACA,BNI_ICSL18273; CATGC,BNI_ICSL18274; CGGAGT,BNI_ICSL18275; AGTGGC,BNI_ICSL18276; CCTGCA,BNI_ICSL18277; CCAGTC,BNI_ICSL18278; GACGTGA,BNI_ICSL18279; GCTATAA,BNI_ICSL18280; CTGT,BNI_ICSL18281; GCTAC,BNI_ICSL18282; CGTCTA,BNI_ICSL18283; TGACCT,BNI_ICSL18284; GTACTC,BNI_ICSL18285; TACGCC,BNI_ICSL18286; TCATAGT,BNI_ICSL18287; ATCGTAT,BNI_ICSL18288; TAAC,BNI_ICSL18289; CTGAC,BNI_ICSL18290; TTGCAC,BNI_ICSL18291; ACCTGC,BNI_ICSL18292; CCGTAC,BNI_ICSL18293; TTACGAT,BNI_ICSL18294; TACTGAT,BNI_ICSL18295; CTCGA,BNI_ICSL18296; GACTC,BNI_ICSL18297; GTTAGC,BNI_ICSL18298; CTAGCT,BNI_ICSL18299; CTTGAC,BNI_ICSL18300; TCGACC,BNI_ICSL18301; CTTGAGA,PVK801_P23_pl3; CGCCGAT,1002_11RSSAVRT; AGTGTGC,1005_11RSSAVRT; CATGTTA,1007_11RSSAVRT; AGTACTT,2015_11RSSEVRT; ATCAGTT,296B_pl4; ACTTGAT,Blank; AGGAGTC,Blank; TGTAAGC,Blank; AATTGGC,Blank; TAATTGC,Blank; GAATTCT,Blank; GCAACGT,BNI_ICSL18087; GCCAGAT,BNI_ICSL18088; GATAGCT,BNI_ICSL18089; TCACCGA,BNI_ICSL18094; CTGGAAC,BNI_ICSL18128; AGAGCCT,BNI_ICSL18137; GTCTGAA,BNI_ICSL18138; ATCCGGA,BNI_ICSL18141; ACCGAGT,BNI_ICSL18156; AAGGTTC,BNI_ICSL18163; CCAGGTA,BNI_ICSL18190; TCAAGTT,BNI_ICSL18302; ACGTGTA,BNI_ICSL18303; CAGCGTA,BNI_ICSL18304; CTGAATT,BNI_ICSL18305; GTAGAGC,BNI_ICSL18306; ACGGCAT,BNI_ICSL18307; ATACTGC,BNI_ICSL18308; GCTGGAC,BNI_ICSL18309; GATCATA,BNI_ICSL18310; GATGCAT,BNI_ICSL18311; AGTTCGA,BNI_ICSL18312; TCGTTAA,BNI_ICSL18313; GACCTAT,BNI_ICSL18314; TTCTTGA,BNI_ICSL18315; GCGGCTA,BNI_ICSL18316; GTCATCA,BNI_ICSL18317; GCATTGA,BNI_ICSL18318; CTAATGT,BNI_ICSL18319; GCTAATT,BNI_ICSL18320; TGATCAT,BNI_ICSL18321; CATTAGT,BNI_ICSL18322; GGACCTT,BNI_ICSL18323; CGTTATA,BNI_ICSL18324; CAGTGAC,BNI_ICSL18325; CAGGTAT,BNI_ICSL18326; GTCGATA,BNI_ICSL18327; ACGCTGA,BNI_ICSL18328; CGTCGGA,BNI_ICSL18329; ATTAGCA,BNI_ICSL18330; GTGTACA,BNI_ICSL18331; TTAGACT,BNI_ICSL18332; GCACACT,BNI_ICSL18333; TGCAATA,BNI_ICSL18334; TATACGT,BNI_ICSL18335; TAAGCTT,BNI_ICSL18336; GACTATT,BNI_ICSL18337; GAATCTA,BNI_ICSL18338; TAGCGGC,BNI_ICSL18339; AGGTTAC,BNI_ICSL18340; AAGTCTT,BNI_ICSL18341; ATATCGT,BNI_ICSL18343; GCGTAAT,BNI_ICSL18344; CTTAGAT,BNI_ICSL18345; TAGGTCA,BNI_ICSL18346; TGTCATT,BNI_ICSL18347; CGCTTAA,BNI_ICSL18348; ATTCGAC,BNI_ICSL18348; GGCAACT,BNI_ICSL18349; TGTATCA,BNI_ICSL18350; AGTCTAT,BNI_ICSL18351; AGCGTTA,BNI_ICSL18352; TGATACA,BNI_ICSL18353; TCTGATA,ICSB38; GTACTTA,ICSB731; TGGCAAC,ICSB749; TACGAGC,ICSB766; TCGCGCA,ICSV93046; TGTGCAA,IS14131; GTTACGA,IS14212; TTGACTA,IS15957; CAATGTT,IS16529; CACAGGT,IS18903; CAGTTGA,IS18926; TAGCCAT,IS18941; CTAGCAT,IS18955; ATGATCT,IS22670; ATGTCAA,IS22868; ATAGTCA,IS27206; CGACAGT,IS41757; TGCATAT,IS41759; GGTGGCA,IS42124; CAAGATC,Nr481; TCAGTAT,PVK801_P23_pl4; AGCTGCA,SSV84; GCGGATGT,00BEE6P_25; GAACGAAT,00BEF5R5; CACGACT,02_PR_3009KB; AGCGATAA,02_SB_F5DT_12B; GCTGCGGA,02D_SBF4DT57; ACAATGGA,02SB_F4FT_189; AATGTCT,02SB_F5DT_169; GTATTAC,03_fit_38; ATTGATC,5147OR; GAAGACAT,96_C2_F4P_98; ACTCGAGA,98_BE_5SDT_82B; ATACAGGA,99CPO_634B; CAGTTGGT,A223; GTTAACGA,AT623; GCAGTTC,B2_1; GGCCGAGT,B2_2; AACAGTGA,B2_4; CAATAGGA,B6_12; CAAGTGAA,BI_1; GGATATC,BI_3; ACTGCCA,BI_4; GCTAGTGT,BLANK; TAACGAGA,BO_12; ACGTGTGT,CRP13_1CIRAD; TATTGCA,CRP13_2CIRAD; GCTTAGC,CRP13_3CIRAD; GATCAGAA,CSM388; AACGTAGA,CSV13; GCGCGTGA,DEEO_1; CAAGAAGT,Gaineaktsina; ACCGGTC,Guineaniger; AGGCTAGA,ICSB38; TCGCAAGT,IS12507; GAGTCGC,IS12931; TCATGAC,IS14353; GTACGTGT,IS14414; AAGACAGT,IS14732; CGATGTGT,IS15302; GTAACAGA,IS15629; GGAGCTGT,IS19970; CCACCAGT,IS20064; ATCTAGC,IS20114; ATGACGC,IS22677B; ATGCACC,IS23200_1; GAACATGA,IS23200_2; GTGCCAC,IS23206; ATATGTC,IS23645; CGGCTCA,IS24138; CTAGTGGT,IS25991_1; AATACGGA,IS25991_2; GCGAGGTT,IS26320; TGAATTC,IS27113; TGGACCT,IS27245; TGAGCGC,IS27494; TTCGAAGA,IS27530; GGCGTGTA,IS27564BF; CACAGAGT,IS27580; GTTATTC,IS27599; ACAAGAGT,IS30615; CGGCAGGT,IS32360; TTGGCGGA,IS3534; CATATGC,IS3958; AGTTACT,IS39775; CTGAGTGT,IS67316F; TGCAGTGT,IS6781; CGCCGCAT,IS7978; TGTCAAGA,IS9220B; CGTATGGT,Kapelga; TATGTAC,Kaurakatsina; TTCGGAC,Kenikidje; CATTGAGA,Lata3; TGCATAGA,M5_8; CCGAGCT,MG; TAGTACT,MR732; AGCTTGGT,Nanamzohaant; TTCGCCA,OOKO_F8DT19; TCCACGC,OZSBF4FT_298; CGGTAGC,Queni; GTGCAAGA,S2_8; ACGTAAGA,S2_9_1; TGCAAGAA,S2_9_2; TAGCGTGT,S29; TCGTGGAT,S4_5; TTGATAC,S4_7; GACACTC,S5_11; ACTCCGC,S7_9; GGTACAC,SARIA550; TGACTGGT,SARIA5809B; TTGTGCGA,SARIA88014; CGAGTAC,Segnifa; TATAGTC,Sepon82; AGACAAGT,SI_1; GTCATGGT,SI_2; CTCACGGA,SI_3; ACAGATGA,SI_4; AACAAGGT,SSD35; AGAACGAT,00SBF5DT; GGTTCATT,97_SB_F5DT; GTTCATTA,AHURA19; GCTGGATT,B1_2; CCACTGCA,B2_3; AAGCAGAT,BAHUBANZA3; CAGGAATA,BIBALAWILI; TAGCAGTA,BLANK; CCGACCAT,bUHUBANZA; GTCAATAT,CG719; GACACCTT,CIRAD406; CGGCCGTA,CMDT45; GTGCGATT,CSM219; CATGGTGT,CSM335; CATAATGA,CSM485; TCCGCCAA,CSM63_E; TTGACAAT,CSM660; GACTGTGT,D10_1; ACCACCGT,D10_A; ATATTCGT,D10_B; CACGCCAT,DAGNALI; CCGCCTAA,DAUAE; GTCTGGAT,DORELKEN; CTGAAGAA,DOU_A; GTTCTAAT,DOUA_B; CTAATTGA,DOUA9; CACCACGT,FALANBA; AGAACTGA,FANBAB; TGCTTAAT,FARA22; CGAAGAAT,FARAFARA; ATGCTGGT,FARAFARA12; CGCTTGAA,FARAFARA17; AACGAGTA,FARFARA27; CTGTGGTA,G120; GGACAATA,GKT0020; GAATCGAA,GPN99_271_20; GATCTGGT,IPS001; ACTAGGAA,IS15401; TACGTTAA,IS1959; GTGTCAGT,IS23767; CCTTAGAA,IS25650; TACAGGAT,IS26077; CTATGTAA,IS30804; CTAGAGTA,IS7402; AAGATCGA,IS7509; AGCAGATA,IS7698; ATTCAGTT,KABA24; TGGCTATT,KENDI_YENKA; TCGATGGT,MACEDU; GCAAGTAA,MAGDAKUNYA20; TGCGGATT,MAKHODAYANA13; GTGGCTAT,MALA18; CGGTGATT,MAYSAMANY; AATGACGA,MIPSOR90_30; ACAGGATA,NIENISA; GCGCGCAT,RIBDAHU; GACTCAAT,S1_5; AGATACGA,S9_BA_D; AGTGGCTT,S9_BA_E; AACGGAAT,SAMBALMA1; ACAGCCTT,SAMBALMA6; TCTTAGGT,SARDAWA_10; TGTGCAGT,SARDAWA2_1; TTACGGTA,SARDAWA21_1; CTCCTCGA,SARDAWA21_2; TTAGTCGA,SGBA_A; TCATTGTA,SIRBMOLA; TCCGATAT,SIRD; CGCAACTT,SIRF; ATCGGTGT,SK5912; GGTACTAT,SOKOYKABA; GCCTCCGA,SSV20015; CATGTATT,SSV20018; TTGCATAT,SSV20023; TATGCTGA,SSV20036; CCTACCGA,SSV20047; TCGGTTGA,SSV20052; TCTGATTA,SSV20054; TGTCTTAA,SSV20055; GAACAGTT,SSV20060; GTATACTA,SSV20062; ATCTCTGA,SSV20064; TTCTTGGA,SSV20071; CGCGCCTA,SSV20075; GCTATAGA,SSV20088; AGTCGTGT,SSVMDSARG008; AATTCTGT,SSVMDSORY005; CAACGCTT,SSVMGSORY20006; GGTTACGT,TANKAMBA14; TCGAGATA,WASSA; GCATTGGT,XARKPZOJET16; TGAAGCAA,YARBA; AAGCGATA,YARFAPGORI23; AGACTGAA,YARSHEMORI25; CGATTAGA,ZABUWA17; ACGATTAA,ZABUWA5
Flowcell_Lane = D0TGUACXX_1