co-infection with Prevotella intermedia abscess 2R
Samples were prepared for sequencing following the method in Kozich et al. (Appl Environ Microbiol 2013) and size selected using BluePippin with a window set from 332 bp to 432 bp. Samples with 10% PhiX were sequenced on the MiSeq system with 2 x 250 v2 chemistry using custom sequencing primers as in Kozich et al.