An increased abundance of Clostridiaceae characterizes arthritis in inflammatory bowel disease and rheumatoid arthritis: a cross-sectional study
Libraries were generated from microbial genomic DNA extracted as described above using . Nextera XT preparations (Illumina, San Diego, CA) followed by custom barcoding PCR and sequenced using a HiSeq 2500 and 125bp paired end runs (Illumina, San Diego, CA). The resulting sequence data was stripped of adapters and quality filtered using Trimmomatic v. 0.32 and processed using SHOGUN pipeline.