Severe acute respiratory syndrome coronavirus 2
ARTIC v3, minimap2 v2.17, ivar v1.2.3, samtools v1.11. Using minimap2, short reads mapped to SARS-CoV-2 NCBI accession MN908947.3. Using samtools, proper_pairs (samflag 2) mapping to MN908947.3 retained, unmapped reads (samflag 4) discarded (to filter out non-SARS-CoV-2 cDNA). Filtered reads submitted to NCBI
SUB8574828
VIC16514_illumina