GA1 Chlamydia psittaci:Illumina
Nucleic acid was extracted from the purified EBs using the MasterPure Complete DNA and RNA Purification Kit (Epicentre, Madison, WI) according to the manufacturers instructions.  Libraries were prepared using the Illumina Nextera XT library preparation kit per manufacturers instructions and sequenced on a MiSeq System (Illumina, San Diego, CA) with version 2 500 cycle kits using 2x250 paired end sequencing.