Genomic sequencing of Escherichia coli
Sequencing libraries were created using the Illumina Nextera XT DNA Sample Preparation Kit according to manufacturer protocol. Paired-end sequencing was performed on an Illumina MiSeq sequencer using Illumina 2x75-cycle Reagent Kit v3. Sequencing reads were mapped to the E. coli W3110 reference genome (NCBI RefSeq accession: NC_ 007779.1) using MiSeq integrated analysis software.