metagenome sequencing of human vaginal swab sample from mother of caesarean section born neonate
Whole metagenome shotgun sequencing was performed on libraries prepared from 100 ng DNA on a HiSeq2500 (Illumina) with an adapted protocol for low amount DNA libraries and sequencing 2 x 150 nt. Metagenomic sequencing was performed at GATC Biotech AG (Germany). Metagenomic reads were trimmed, human reads were removed and preprocessed reads were assembled using the integrated metaomic pipeline IMP