Mitogenome sequence capture of Acrocephalus yamashinae: MNHN1888503
Libraries were prepared from DNA extracted from historical museum samples in a dedicated ancient DNA laboratory using double indexed Illumina libraries using KAPA Library Preparation kits (Kapa Biosystems, Wilmington, MA, USA) and iNext adapters (Faircloth & Glenn, 2012). Targeted sequence capture was performed on pooled libraries using the Gallus gallus myBaits mito capture kit. Capture pools were pooled and sequenced using 150 bp paired-end on MiSeq (Center for Conservation Genomics, Smithsonian Conservation Biology Institute).