HIV-1 env and p24 protein of chronic, subtype C, treatment-nave patient
Library preparation for Illumina deep sequencing was done using a Nextera XT DNA Sample Preparation and Index kit (Illumina, San Diego, CA, USA) according to the manufacturers manual. Resulting libraries were normalized and pooled for subsequent sequencing on an Illumina MiSeq platform using the 2  250 cycle paired-end sequencing protocol