AVENIO Expanded on human cfDNA: breast cancer
DNA was prepared into libraries using  the Roche AVENIO expanded kit according to manufacturer's recommendations.  Library was sequenced on Illumina NextSeq 500  and analyzed on the AVENIO Oncology Analysis Server. Deduped bam used  for SNV calls. PosDeduped bam used for INDEL calls. Sorted bam used for CNV  and fusion calls.