Illumina MiSeq paired end sequencing; Chlamydia Illumina MiSeq 2x151-bp paired-end sequencing
Cultured on BGM cells and DNA extracted as described previously (Sachse et al., 2014, Syst Appl Microbiol). A genomic library was prepared using 1 ng of genomic DNA and the Nextera XT kit, and sequencing was performed on the MiSeq platform at Anses using a Micro V2 with 2x151 cycles.